Click here to switch to the map view.

The map label for this gene is p49 [H]

Identifier: 13474539

GI number: 13474539

Start: 4355764

End: 4357338

Strand: Reverse

Name: p49 [H]

Synonym: mll5443

Alternate gene names: 13474539

Gene position: 4357338-4355764 (Counterclockwise)

Preceding gene: 13474546

Following gene: 13474538

Centisome position: 61.93

GC content: 65.65

Gene sequence:

>1575_bases
GTGAGCGAGTTCGACGCCATCTTTGTCGGGGCGGGCCACAACAGTCTGGCATGCGCCGCGCATCTGGCGCTCAAAGGCTG
GAAAACCGGGATTTTCGAGCGCAGTTCCACGATCGGCGGCGCCGTCCAGACCCGCGAATTCACCCTTCCCGGCTTCCGCC
ACGATTTCGGCGCGATGAATCTGAGCCTCTTTGCCGGCTCTGCCTTTCACCGGAAATATGCAAATGAATTGAAAACGCAG
GGCCTGGAATTCGCGCCGGTCGCCGACTGTTTCGCCAGCGCCTTTCCGGATGGACGCTGGTTCGGCGTGAGCAACGACCT
GGAAAAGACGGCGAGCCGCATGGCCGCTTTCTCCGCCGCCGATGCCGCGACATGGCGAAAGCTGGTAGCCGCCTTCCCGG
GCGAGGCCGAGCATCTGTTCAGGCTGCTAGGCTCGCCGATGAGCGCCCGTGCGCTGGCCGGCACGGCGTGGAACCTGTGG
CGCAAGAAGGGTGTCGCCGGCGCGCTCGACACGGGAAGGCTGTTGCTGTCCTCACCCCGCACGTGGCTGGAGGAGACTTT
CGAGTCGCCTTATGTGCGGGCGACGCTCGCCACCTGGGGCATGCACCTCGACTTCGCCCCCGACATCGCGGGAGGTGCGG
TGTTCCCCTATCTGGAATCGATGGCCAACCAGAGTTTCGGCATGGTGCTGGGCAAGGGCGGCGCCGACACCATCATCCGG
GCACTGGCCGGCATGGTCACATCTGCCGGCGGCAAGATCGTCACCGGCGCCGAAGTGTCAGAGATTACGGTTTCCAACGG
CAAGGCGACCGGGGTGCGGCTCACTTCCGGTGAAACGCATACGGCGACCAAAGCCGTTATCGCTGGCGTCGCGCCCAAGG
CGCTGACCGGCACGCTGCTGCCCGGCGGTTCCGGCAATGCCGGCTTCGACACGGCGATGAAGAAGTTTCGGTACGCGCCG
GGCACGATGATGATCCATCTGGCGCTGGACGAGTTGCCGGGCTGGCGCGCCGGGTCTGAGCTGCGGCAGTTCGCCTATGT
GCATCTGTCACCCTCGCTCGACGCCATGTCGCGCACCTACCAGCAGGCAATGGCCGGCATGCTGCCGGACGAACCGGTTC
TGGTCGTCGGCCAACCGACCGCGATCGATCCGTCACGCGCGCCGCAGGGCAAGCATGTGCTGTGGGTGCAGGTGCGCATG
CTGCCTGCCGAGATAACAGGCGATGCCGGCGGCAAGATCGCGCCCGCGCATTGGGATCAGGTCAAGGACGCCTACGCCGA
GCGCGTGCTCGACATCATCGAGACTTATGCGCCCGGCCTGCGGAGCAAAATCCTCGGCCGATCGGTGTTCTCGCCCATCG
ATCTCGAGCGCGAGAACCCGAACCTTGTCGGTGGCGATCAAGTCTGCGGCAGCCATCATCTGGCGCAGAACTTTCTGTTC
CGCCCGGCGCGCGGCTATGCCGGCTGGAACACGCCGGTCGGCAATCTGCATCTGACGGGAGCCGCGACATGGCCGGGCGC
CGGCACCGGTGCGGCCTCGGGTTTCATGCTCGCGCAACAGCTAGGCGGGAGGTAG

Upstream 100 bases:

>100_bases
ATAGTGATGATCAAGGCTCGTCTCGGCCCTTAATATCCTACTAGACGAAAACATATGCATCTGCAATTATCTTTAAGCAT
AAAGGAAATGGGAACGGGGC

Downstream 100 bases:

>100_bases
GCTCCAACGATTTTATCAAGGCGACGAGAGGCAAGGCGCTGCTGCCACGAAGCCTGAACCAATGAACGGACGGTGCCGCG
CAAAGACAATAACCAACAAG

Product: dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MSEFDAIFVGAGHNSLACAAHLALKGWKTGIFERSSTIGGAVQTREFTLPGFRHDFGAMNLSLFAGSAFHRKYANELKTQ
GLEFAPVADCFASAFPDGRWFGVSNDLEKTASRMAAFSAADAATWRKLVAAFPGEAEHLFRLLGSPMSARALAGTAWNLW
RKKGVAGALDTGRLLLSSPRTWLEETFESPYVRATLATWGMHLDFAPDIAGGAVFPYLESMANQSFGMVLGKGGADTIIR
ALAGMVTSAGGKIVTGAEVSEITVSNGKATGVRLTSGETHTATKAVIAGVAPKALTGTLLPGGSGNAGFDTAMKKFRYAP
GTMMIHLALDELPGWRAGSELRQFAYVHLSPSLDAMSRTYQQAMAGMLPDEPVLVVGQPTAIDPSRAPQGKHVLWVQVRM
LPAEITGDAGGKIAPAHWDQVKDAYAERVLDIIETYAPGLRSKILGRSVFSPIDLERENPNLVGGDQVCGSHHLAQNFLF
RPARGYAGWNTPVGNLHLTGAATWPGAGTGAASGFMLAQQLGGR

Sequences:

>Translated_524_residues
MSEFDAIFVGAGHNSLACAAHLALKGWKTGIFERSSTIGGAVQTREFTLPGFRHDFGAMNLSLFAGSAFHRKYANELKTQ
GLEFAPVADCFASAFPDGRWFGVSNDLEKTASRMAAFSAADAATWRKLVAAFPGEAEHLFRLLGSPMSARALAGTAWNLW
RKKGVAGALDTGRLLLSSPRTWLEETFESPYVRATLATWGMHLDFAPDIAGGAVFPYLESMANQSFGMVLGKGGADTIIR
ALAGMVTSAGGKIVTGAEVSEITVSNGKATGVRLTSGETHTATKAVIAGVAPKALTGTLLPGGSGNAGFDTAMKKFRYAP
GTMMIHLALDELPGWRAGSELRQFAYVHLSPSLDAMSRTYQQAMAGMLPDEPVLVVGQPTAIDPSRAPQGKHVLWVQVRM
LPAEITGDAGGKIAPAHWDQVKDAYAERVLDIIETYAPGLRSKILGRSVFSPIDLERENPNLVGGDQVCGSHHLAQNFLF
RPARGYAGWNTPVGNLHLTGAATWPGAGTGAASGFMLAQQLGGR
>Mature_523_residues
SEFDAIFVGAGHNSLACAAHLALKGWKTGIFERSSTIGGAVQTREFTLPGFRHDFGAMNLSLFAGSAFHRKYANELKTQG
LEFAPVADCFASAFPDGRWFGVSNDLEKTASRMAAFSAADAATWRKLVAAFPGEAEHLFRLLGSPMSARALAGTAWNLWR
KKGVAGALDTGRLLLSSPRTWLEETFESPYVRATLATWGMHLDFAPDIAGGAVFPYLESMANQSFGMVLGKGGADTIIRA
LAGMVTSAGGKIVTGAEVSEITVSNGKATGVRLTSGETHTATKAVIAGVAPKALTGTLLPGGSGNAGFDTAMKKFRYAPG
TMMIHLALDELPGWRAGSELRQFAYVHLSPSLDAMSRTYQQAMAGMLPDEPVLVVGQPTAIDPSRAPQGKHVLWVQVRML
PAEITGDAGGKIAPAHWDQVKDAYAERVLDIIETYAPGLRSKILGRSVFSPIDLERENPNLVGGDQVCGSHHLAQNFLFR
PARGYAGWNTPVGNLHLTGAATWPGAGTGAASGFMLAQQLGGR

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=556, Percent_Identity=29.4964028776978, Blast_Score=172, Evalue=6e-43,
Organism=Caenorhabditis elegans, GI17540238, Length=550, Percent_Identity=26.1818181818182, Blast_Score=138, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55520; Mature: 55389

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFDAIFVGAGHNSLACAAHLALKGWKTGIFERSSTIGGAVQTREFTLPGFRHDFGAMN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHCCCCCE
LSLFAGSAFHRKYANELKTQGLEFAPVADCFASAFPDGRWFGVSNDLEKTASRMAAFSAA
EEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
DAATWRKLVAAFPGEAEHLFRLLGSPMSARALAGTAWNLWRKKGVAGALDTGRLLLSSPR
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCH
TWLEETFESPYVRATLATWGMHLDFAPDIAGGAVFPYLESMANQSFGMVLGKGGADTIIR
HHHHHHHCCCEEEEEHHHHCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHH
ALAGMVTSAGGKIVTGAEVSEITVSNGKATGVRLTSGETHTATKAVIAGVAPKALTGTLL
HHHHHHHCCCCCEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCHHHEEEEC
PGGSGNAGFDTAMKKFRYAPGTMMIHLALDELPGWRAGSELRQFAYVHLSPSLDAMSRTY
CCCCCCCCHHHHHHHHCCCCCCEEEEEEEHHCCCCCCCHHHHHEEEEEECCCHHHHHHHH
QQAMAGMLPDEPVLVVGQPTAIDPSRAPQGKHVLWVQVRMLPAEITGDAGGKIAPAHWDQ
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEHEECCCCCCCCCCCHHHH
VKDAYAERVLDIIETYAPGLRSKILGRSVFSPIDLERENPNLVGGDQVCGSHHLAQNFLF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHC
RPARGYAGWNTPVGNLHLTGAATWPGAGTGAASGFMLAQQLGGR
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SEFDAIFVGAGHNSLACAAHLALKGWKTGIFERSSTIGGAVQTREFTLPGFRHDFGAMN
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHCCCCCE
LSLFAGSAFHRKYANELKTQGLEFAPVADCFASAFPDGRWFGVSNDLEKTASRMAAFSAA
EEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
DAATWRKLVAAFPGEAEHLFRLLGSPMSARALAGTAWNLWRKKGVAGALDTGRLLLSSPR
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCH
TWLEETFESPYVRATLATWGMHLDFAPDIAGGAVFPYLESMANQSFGMVLGKGGADTIIR
HHHHHHHCCCEEEEEHHHHCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHH
ALAGMVTSAGGKIVTGAEVSEITVSNGKATGVRLTSGETHTATKAVIAGVAPKALTGTLL
HHHHHHHCCCCCEEECCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCHHHEEEEC
PGGSGNAGFDTAMKKFRYAPGTMMIHLALDELPGWRAGSELRQFAYVHLSPSLDAMSRTY
CCCCCCCCHHHHHHHHCCCCCCEEEEEEEHHCCCCCCCHHHHHEEEEEECCCHHHHHHHH
QQAMAGMLPDEPVLVVGQPTAIDPSRAPQGKHVLWVQVRMLPAEITGDAGGKIAPAHWDQ
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEHEECCCCCCCCCCCHHHH
VKDAYAERVLDIIETYAPGLRSKILGRSVFSPIDLERENPNLVGGDQVCGSHHLAQNFLF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHC
RPARGYAGWNTPVGNLHLTGAATWPGAGTGAASGFMLAQQLGGR
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]