| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is dppD [H]
Identifier: 13474535
GI number: 13474535
Start: 4351316
End: 4352194
Strand: Reverse
Name: dppD [H]
Synonym: mll5437
Alternate gene names: 13474535
Gene position: 4352194-4351316 (Counterclockwise)
Preceding gene: 13474536
Following gene: 13474534
Centisome position: 61.86
GC content: 68.26
Gene sequence:
>879_bases ATGAGCGCCTGTCTCGACATCGCCAATCTCAGCGCCGTGCTGCCGAACGGCCAGCGCGTGCTGCGCTCGGTGTCGCTTTC CGTGCAGCCCGGCGAGGTGCGCGCGTTGGTCGGCGAGAGCGGCGCCGGCAAGACGATGATCGGCAAGGCGGTGCTTGGTG TGTTGCCGTCGAGCGTGCGCATCGTCGAAGGCGACATGCTGCTCGAGGGCGAAGACCTCGGCAAGCTTCAGCCCAAGGCA AGGCGCACGCTGATCGGCGCACGCACGGCGCTGATCCCGCAGGATCCGCTGACCGCGCTCAATCCGTCGCGCCGCATCGG CCCGCAGATGACCGACCGGCTGGTGCGCATTCTCGGCTGGAGCGGCGAGAAGGCCGACACCCGCATCCGGCAATTGCTGG ACGAGGTGCAGATCCGCGACCCCGAGCGCGTGCTGAAGAGCTATCCGCATGAGCTCTCCGGCGGCATGCGCCAGCGCGTG CTGATCGCGGCCGCCTTCGCCGCCGAACCCCGGCTGATCGTCGCCGACGAACCGACCACGGCGCTCGACGTCACCGTGCA GAAGCAGATTCTGCGCCTGATCGCCGCCTTGCAGCGCGAGCACGGCACCGCGATCCTGTTCGTCACCCATGATCTCGGCG TCGTCGCCAAGATCAGCCAGAAGGTCTCGGTGCTTTATGCCGGCAAGGTGGTGGAGGAAGCCGAAACGGCAGCGCTCTTT GCCGCCCCTCAGCACCCCTATACGCGGGCGCTGATGGCGGCGACGCCGCGCTATACCGACCCCTTCGCCTCGCTGAAACC CGTGGACGAAGCGGTGCTGGCTGGGCTTGCCGCCGAGATCGCAGCGGCAGACCTGGCGTGGAGGCGGCCCCATGGTTGA
Upstream 100 bases:
>100_bases GGTGGGTGCTGGTGTTTCCGCTGATCACGCTGATCCTCACCGTGCTGTCGTTCAGCCAATTCGGCGAAGCGCTGAAGGCG CGTTTCGACCCGGTGCTGCG
Downstream 100 bases:
>100_bases GCCGCTGTTTTCCGTGCGCGGGCTGAAGGTCGCGCTGCCTGACATGACCCGCAAGCCGCTGATCGGCCGCGCGCCGTTGG CCGAGATCCTGAAAGGGCTC
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSACLDIANLSAVLPNGQRVLRSVSLSVQPGEVRALVGESGAGKTMIGKAVLGVLPSSVRIVEGDMLLEGEDLGKLQPKA RRTLIGARTALIPQDPLTALNPSRRIGPQMTDRLVRILGWSGEKADTRIRQLLDEVQIRDPERVLKSYPHELSGGMRQRV LIAAAFAAEPRLIVADEPTTALDVTVQKQILRLIAALQREHGTAILFVTHDLGVVAKISQKVSVLYAGKVVEEAETAALF AAPQHPYTRALMAATPRYTDPFASLKPVDEAVLAGLAAEIAAADLAWRRPHG
Sequences:
>Translated_292_residues MSACLDIANLSAVLPNGQRVLRSVSLSVQPGEVRALVGESGAGKTMIGKAVLGVLPSSVRIVEGDMLLEGEDLGKLQPKA RRTLIGARTALIPQDPLTALNPSRRIGPQMTDRLVRILGWSGEKADTRIRQLLDEVQIRDPERVLKSYPHELSGGMRQRV LIAAAFAAEPRLIVADEPTTALDVTVQKQILRLIAALQREHGTAILFVTHDLGVVAKISQKVSVLYAGKVVEEAETAALF AAPQHPYTRALMAATPRYTDPFASLKPVDEAVLAGLAAEIAAADLAWRRPHG >Mature_291_residues SACLDIANLSAVLPNGQRVLRSVSLSVQPGEVRALVGESGAGKTMIGKAVLGVLPSSVRIVEGDMLLEGEDLGKLQPKAR RTLIGARTALIPQDPLTALNPSRRIGPQMTDRLVRILGWSGEKADTRIRQLLDEVQIRDPERVLKSYPHELSGGMRQRVL IAAAFAAEPRLIVADEPTTALDVTVQKQILRLIAALQREHGTAILFVTHDLGVVAKISQKVSVLYAGKVVEEAETAALFA APQHPYTRALMAATPRYTDPFASLKPVDEAVLAGLAAEIAAADLAWRRPHG
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=232, Percent_Identity=24.5689655172414, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI31657092, Length=211, Percent_Identity=24.6445497630332, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI42490749, Length=269, Percent_Identity=28.6245353159851, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI11967969, Length=256, Percent_Identity=23.828125, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI105990541, Length=225, Percent_Identity=22.2222222222222, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI21536378, Length=256, Percent_Identity=25, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787759, Length=261, Percent_Identity=47.1264367816092, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI1789963, Length=240, Percent_Identity=44.5833333333333, Blast_Score=216, Evalue=1e-57, Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=42.5855513307985, Blast_Score=207, Evalue=5e-55, Organism=Escherichia coli, GI1787548, Length=266, Percent_Identity=37.9699248120301, Blast_Score=196, Evalue=2e-51, Organism=Escherichia coli, GI1788506, Length=256, Percent_Identity=42.96875, Blast_Score=194, Evalue=4e-51, Organism=Escherichia coli, GI48994883, Length=258, Percent_Identity=40.6976744186046, Blast_Score=191, Evalue=3e-50, Organism=Escherichia coli, GI1789890, Length=241, Percent_Identity=39.4190871369295, Blast_Score=164, Evalue=6e-42, Organism=Escherichia coli, GI1789962, Length=265, Percent_Identity=33.9622641509434, Blast_Score=161, Evalue=5e-41, Organism=Escherichia coli, GI1787500, Length=253, Percent_Identity=36.3636363636364, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1787758, Length=245, Percent_Identity=33.469387755102, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1789891, Length=236, Percent_Identity=33.8983050847458, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=33.4630350194552, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1787547, Length=237, Percent_Identity=31.2236286919831, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=33.9920948616601, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1786398, Length=258, Percent_Identity=31.3953488372093, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1789032, Length=274, Percent_Identity=27.007299270073, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=31.7391304347826, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081791, Length=279, Percent_Identity=28.673835125448, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1786319, Length=243, Percent_Identity=28.8065843621399, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789873, Length=227, Percent_Identity=32.15859030837, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=34.1232227488152, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788644, Length=245, Percent_Identity=30.6122448979592, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787370, Length=249, Percent_Identity=26.1044176706827, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=26.7489711934156, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=32.5688073394495, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=27.3858921161826, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788761, Length=255, Percent_Identity=27.0588235294118, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787712, Length=258, Percent_Identity=26.7441860465116, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=29.6943231441048, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1790162, Length=245, Percent_Identity=25.7142857142857, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=232, Percent_Identity=30.1724137931034, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=235, Percent_Identity=27.6595744680851, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=29.2181069958848, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786872, Length=242, Percent_Identity=29.3388429752066, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081709, Length=245, Percent_Identity=25.7142857142857, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.5154185022026, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1789593, Length=233, Percent_Identity=30.0429184549356, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=29.5546558704453, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=27.2321428571429, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=29.5, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=29.8245614035088, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI48995001, Length=297, Percent_Identity=28.6195286195286, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786654, Length=249, Percent_Identity=25.7028112449799, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787105, Length=243, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790525, Length=215, Percent_Identity=29.7674418604651, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=26.4423076923077, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790739, Length=230, Percent_Identity=27.8260869565217, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788210, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=217, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87082268, Length=225, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787112, Length=234, Percent_Identity=29.9145299145299, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786253, Length=229, Percent_Identity=26.6375545851528, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=29.2452830188679, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=247, Percent_Identity=26.7206477732794, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=22.8070175438596, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787972, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=27.8846153846154, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1788897, Length=240, Percent_Identity=25.4166666666667, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=30.3030303030303, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=29.1304347826087, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17541710, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71984940, Length=217, Percent_Identity=28.110599078341, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI115534520, Length=226, Percent_Identity=25.2212389380531, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646699, Length=227, Percent_Identity=29.0748898678414, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=26.2008733624454, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71992290, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193208177, Length=250, Percent_Identity=25.2, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=253, Percent_Identity=24.1106719367589, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323959, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322980, Length=264, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=212, Percent_Identity=25.9433962264151, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI23397593, Length=250, Percent_Identity=29.2, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=250, Percent_Identity=26.8, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221500365, Length=222, Percent_Identity=26.5765765765766, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24643674, Length=233, Percent_Identity=22.3175965665236, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007184, Length=220, Percent_Identity=26.8181818181818, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI17136592, Length=221, Percent_Identity=26.6968325791855, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=23.394495412844, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647959, Length=217, Percent_Identity=28.110599078341, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=219, Percent_Identity=30.5936073059361, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24582014, Length=195, Percent_Identity=25.6410256410256, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24582012, Length=195, Percent_Identity=25.6410256410256, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31368; Mature: 31237
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSACLDIANLSAVLPNGQRVLRSVSLSVQPGEVRALVGESGAGKTMIGKAVLGVLPSSVR CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE IVEGDMLLEGEDLGKLQPKARRTLIGARTALIPQDPLTALNPSRRIGPQMTDRLVRILGW EEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC SGEKADTRIRQLLDEVQIRDPERVLKSYPHELSGGMRQRVLIAAAFAAEPRLIVADEPTT CCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHEECCCCCEEEEECCCCC ALDVTVQKQILRLIAALQREHGTAILFVTHDLGVVAKISQKVSVLYAGKVVEEAETAALF EEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHEEHHHHHHHHHHHEEE AAPQHPYTRALMAATPRYTDPFASLKPVDEAVLAGLAAEIAAADLAWRRPHG ECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SACLDIANLSAVLPNGQRVLRSVSLSVQPGEVRALVGESGAGKTMIGKAVLGVLPSSVR CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE IVEGDMLLEGEDLGKLQPKARRTLIGARTALIPQDPLTALNPSRRIGPQMTDRLVRILGW EEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC SGEKADTRIRQLLDEVQIRDPERVLKSYPHELSGGMRQRVLIAAAFAAEPRLIVADEPTT CCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHEECCCCCEEEEECCCCC ALDVTVQKQILRLIAALQREHGTAILFVTHDLGVVAKISQKVSVLYAGKVVEEAETAALF EEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHEEHHHHHHHHHHHEEE AAPQHPYTRALMAATPRYTDPFASLKPVDEAVLAGLAAEIAAADLAWRRPHG ECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]