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The map label for this gene is yecS [H]

Identifier: 13474522

GI number: 13474522

Start: 4339722

End: 4340396

Strand: Reverse

Name: yecS [H]

Synonym: mll5422

Alternate gene names: 13474522

Gene position: 4340396-4339722 (Counterclockwise)

Preceding gene: 13474523

Following gene: 13474521

Centisome position: 61.69

GC content: 62.22

Gene sequence:

>675_bases
ATGTCGCTGATCGACACCTTCTTCAATCCCGACGTCATCATGTCCAGCCTGCCGGCGTTGCTGCGCGGCTTCCTGAACAC
GCTGCTGCTTGGCATTCTGAGCATCGGCATCGGCATTCCCATCGGCCTGCTGATCAGCCTGGTGCGGCTCTATGCACCCA
AGCCGCTGCGCTGGCTGGCGGTCGGCTACACCGACATTTTCCGCGCGCTGCCGGTGCTGGTGGTGCTGATCCTGATCTAC
TACGCGCTGCCCTTCCTCGGCATCCGCCTGTCATCCTGGGCGTCCGCCGTGACGGCGTTCGCCTTCATCATGTCGGCCTA
TTCGGCCGAAGTGTTCCGCTCCGGCATCGAGAGCATTCCGAAAGGCCAGTTCGAGGCGTCGCAGGCGCTTGGCCTGCCGT
TCCTTTTGACCTTGCGCAAGGTGGTGCTGCCGCAGGCGATCCGCGTCGTCATCCCGCCGATGACCAGCAATTGCGTCTCG
ATGTTCAAGGACACCTCGCTCGCCTCGACCGTGGCGCTGCCGGAACTCCTGAAGGAAGCGACCAACGCACAGTCACTTTA
CGCCAATCCTTCGCCGCTGATCGGTGCCGCACTGGTCTACCTCATCTTCCTCTGGCCGATGGTTCGCCTCGTCAGCCTGC
TTGAAGACCGCTTCAAGACCGAGAAAGCGCGCTAA

Upstream 100 bases:

>100_bases
CTGCTCCGGCGCCGCTGCCGCGCGGACCGTCTCGCCACGGGCGAGGTCGATTGGTTTTTAACTTTGAACACCCTTTGCTC
TGGGGTTCGGGAACGCTCCC

Downstream 100 bases:

>100_bases
CCTCGCCAACCGATCTCCACCCGCCCAATTCTTCGCAGGAGCCTGCCCGTGAACAAGCACCAAACCGACAATGCGAACGC
CGCCGCGTTCCCCGTCGACA

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLAVGYTDIFRALPVLVVLILIY
YALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIPKGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVS
MFKDTSLASTVALPELLKEATNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKTEKAR

Sequences:

>Translated_224_residues
MSLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLAVGYTDIFRALPVLVVLILIY
YALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIPKGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVS
MFKDTSLASTVALPELLKEATNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKTEKAR
>Mature_223_residues
SLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLAVGYTDIFRALPVLVVLILIYY
ALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIPKGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVSM
FKDTSLASTVALPELLKEATNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKTEKAR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=37.962962962963, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=32.4324324324324, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=34.6341463414634, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787030, Length=177, Percent_Identity=32.7683615819209, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI48994930, Length=85, Percent_Identity=43.5294117647059, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=31.0679611650485, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=28.9719626168224, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786874, Length=171, Percent_Identity=29.2397660818713, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787087, Length=201, Percent_Identity=23.3830845771144, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24560; Mature: 24429

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLA
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH
VGYTDIFRALPVLVVLILIYYALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVSMFKDTSLASTVALPELLKEA
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKTEKAR
HCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLIDTFFNPDVIMSSLPALLRGFLNTLLLGILSIGIGIPIGLLISLVRLYAPKPLRWLA
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH
VGYTDIFRALPVLVVLILIYYALPFLGIRLSSWASAVTAFAFIMSAYSAEVFRSGIESIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KGQFEASQALGLPFLLTLRKVVLPQAIRVVIPPMTSNCVSMFKDTSLASTVALPELLKEA
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNAQSLYANPSPLIGAALVYLIFLWPMVRLVSLLEDRFKTEKAR
HCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]