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The map label for this gene is soxR [C]

Identifier: 13474484

GI number: 13474484

Start: 4296590

End: 4297063

Strand: Reverse

Name: soxR [C]

Synonym: mll5378

Alternate gene names: 13474484

Gene position: 4297063-4296590 (Counterclockwise)

Preceding gene: 13474486

Following gene: 13474480

Centisome position: 61.07

GC content: 67.09

Gene sequence:

>474_bases
ATGGACATTGCCGAAGTGTCGCGCCGCACCGGCGTGCCCGCCTCCACACTTCGCTACTACGAGGAGAAGGGCCTCGTCGC
CTCGATCGGCCGTCGCGGCCAGCGCCGCCTGTTCGACCCTGCCGTCCTGGACCGACTCGCCTTGATCGCGCTCGGACGCG
CCGGTGGATTCACACTGGACGACATTTCCTCGATGCTGACGCCCGACGGCCTGCCGAAAATGGATCGAGGGCGCCTCGAT
GCCAAGGCGAATGAACTGGACCAAATCATCCAGCGCCTGAGGGCCATCCGAAAGGCTTTGCGTCACGCCGCTAAATGTCC
GGCCGCCCGGCCGATGGAGTGCCCGACTTTCTGCCGCGCCGTCAGGCTTGCGGGCGCCGGCCGCTTCGAGGTTGCTCCGC
TCGCGCCGTTCAGGGCGGAGGCGGTTTCCGTCACAAGGCGCAAGCGCGAGACTGGCGACGTTCGCCTGGAGTAG

Upstream 100 bases:

>100_bases
GGCGCGGATTGCGGCATAACGGACCTCGCTTTCATGTTGCTCTAACTGATCGTCGCGAGCACTCTACGAGTTCAAGCCGA
CTTGAGGTCAAGCATGAAAT

Downstream 100 bases:

>100_bases
GCCATACTAGCGGCGGACCGTGCGCTGCGACTGGGCAAGGCCGATGAAATCGCGCGCCGCTTGCGGCAGGCTAGAACCGC
GCCGCCAGACCATACCGACC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein; Regulatory Protein MerR; Redox-Sensitive Transcriptional Activator; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Zn(II)-Responsive Transcriptional Regulator; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDIAEVSRRTGVPASTLRYYEEKGLVASIGRRGQRRLFDPAVLDRLALIALGRAGGFTLDDISSMLTPDGLPKMDRGRLD
AKANELDQIIQRLRAIRKALRHAAKCPAARPMECPTFCRAVRLAGAGRFEVAPLAPFRAEAVSVTRRKRETGDVRLE

Sequences:

>Translated_157_residues
MDIAEVSRRTGVPASTLRYYEEKGLVASIGRRGQRRLFDPAVLDRLALIALGRAGGFTLDDISSMLTPDGLPKMDRGRLD
AKANELDQIIQRLRAIRKALRHAAKCPAARPMECPTFCRAVRLAGAGRFEVAPLAPFRAEAVSVTRRKRETGDVRLE
>Mature_157_residues
MDIAEVSRRTGVPASTLRYYEEKGLVASIGRRGQRRLFDPAVLDRLALIALGRAGGFTLDDISSMLTPDGLPKMDRGRLD
AKANELDQIIQRLRAIRKALRHAAKCPAARPMECPTFCRAVRLAGAGRFEVAPLAPFRAEAVSVTRRKRETGDVRLE

Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17341; Mature: 17341

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAEVSRRTGVPASTLRYYEEKGLVASIGRRGQRRLFDPAVLDRLALIALGRAGGFTLD
CCHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCHH
DISSMLTPDGLPKMDRGRLDAKANELDQIIQRLRAIRKALRHAAKCPAARPMECPTFCRA
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VRLAGAGRFEVAPLAPFRAEAVSVTRRKRETGDVRLE
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDIAEVSRRTGVPASTLRYYEEKGLVASIGRRGQRRLFDPAVLDRLALIALGRAGGFTLD
CCHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCHH
DISSMLTPDGLPKMDRGRLDAKANELDQIIQRLRAIRKALRHAAKCPAARPMECPTFCRA
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VRLAGAGRFEVAPLAPFRAEAVSVTRRKRETGDVRLE
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA