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The map label for this gene is ybaO [H]

Identifier: 13474458

GI number: 13474458

Start: 4269635

End: 4270105

Strand: Reverse

Name: ybaO [H]

Synonym: mll5346

Alternate gene names: 13474458

Gene position: 4270105-4269635 (Counterclockwise)

Preceding gene: 13474462

Following gene: 13474457

Centisome position: 60.69

GC content: 60.72

Gene sequence:

>471_bases
ATGGCGCTGGATATCGATGAAATAGACCGAAAACTGCTTGCCGAATTGCAGCGCGACGGCACGTTGTCGGTCGACCAGCT
GTCGGAACGGGTGGCCTTGTCGCGCAATGCCTGCTGGCGCCGGGTCAAGCGGCTGGAGGAAGATGGTGTTATTACCGGGC
GCGTGGCGCTGGTCGATGCCGACAAGCTCGGGCTTGGCCTTTCGGTGTTCATTCTGGTCCGTACGTCCAACCATGATCCC
GACTGGTTGCAGAAGTTTCGGGCGGCGGTGACCGGCTTTCCCGAGATCACCGGCGTCTACCGCATGTCCGGCGACCTCGA
TTATGTCCTGCGCGCCCGCGTTGCCGACGTGAAGGCCTATGACCGGCTCTACCAGCGGCTGATCGCCAAGGTGGCGCTGT
CCGACGTATCCGCCTCCTTCGTCATGGAGGAGATCAAGGAGACGACAATTGTTCCAATGGAAGTGCGCTAA

Upstream 100 bases:

>100_bases
AGCGCTTGCGTTCCGATATGAGTATCCTGACACGCTTCGCCGGTTCATCGGTCTCAAAATGTCCTTGTATTTTGTCACTC
CGTGGGACAAACATCCCAAC

Downstream 100 bases:

>100_bases
AGCGTGCTCAGGTCATAGTGATGCCTGAAAGAAAGCCGTTGATAGCGGCGCGGGCGAATTGACCGAATCGGCAATCGCGC
CGATAGGATCGATTTTATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MALDIDEIDRKLLAELQRDGTLSVDQLSERVALSRNACWRRVKRLEEDGVITGRVALVDADKLGLGLSVFILVRTSNHDP
DWLQKFRAAVTGFPEITGVYRMSGDLDYVLRARVADVKAYDRLYQRLIAKVALSDVSASFVMEEIKETTIVPMEVR

Sequences:

>Translated_156_residues
MALDIDEIDRKLLAELQRDGTLSVDQLSERVALSRNACWRRVKRLEEDGVITGRVALVDADKLGLGLSVFILVRTSNHDP
DWLQKFRAAVTGFPEITGVYRMSGDLDYVLRARVADVKAYDRLYQRLIAKVALSDVSASFVMEEIKETTIVPMEVR
>Mature_155_residues
ALDIDEIDRKLLAELQRDGTLSVDQLSERVALSRNACWRRVKRLEEDGVITGRVALVDADKLGLGLSVFILVRTSNHDPD
WLQKFRAAVTGFPEITGVYRMSGDLDYVLRARVADVKAYDRLYQRLIAKVALSDVSASFVMEEIKETTIVPMEVR

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=51.6556291390728, Blast_Score=174, Evalue=2e-45,
Organism=Escherichia coli, GI1787116, Length=154, Percent_Identity=38.961038961039, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17626; Mature: 17494

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDIDEIDRKLLAELQRDGTLSVDQLSERVALSRNACWRRVKRLEEDGVITGRVALVDA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
DKLGLGLSVFILVRTSNHDPDWLQKFRAAVTGFPEITGVYRMSGDLDYVLRARVADVKAY
CHHCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHH
DRLYQRLIAKVALSDVSASFVMEEIKETTIVPMEVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
ALDIDEIDRKLLAELQRDGTLSVDQLSERVALSRNACWRRVKRLEEDGVITGRVALVDA
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
DKLGLGLSVFILVRTSNHDPDWLQKFRAAVTGFPEITGVYRMSGDLDYVLRARVADVKAY
CHHCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHH
DRLYQRLIAKVALSDVSASFVMEEIKETTIVPMEVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]