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The map label for this gene is soxD [H]

Identifier: 13474361

GI number: 13474361

Start: 4162696

End: 4162962

Strand: Reverse

Name: soxD [H]

Synonym: msl5231

Alternate gene names: 13474361

Gene position: 4162962-4162696 (Counterclockwise)

Preceding gene: 13474362

Following gene: 13474360

Centisome position: 59.17

GC content: 65.17

Gene sequence:

>267_bases
ATGCAGCTTTTCCCTTGCCCGTTCTGCGGTCCGCGCGACGAGACCGAATTCCACTATGGCGGCGATGCCGGCAACGCCAG
GCCTGACGGCGCCGAGGTGCCGATCGAAAGCTGGGCAAGCTATCTCTATCTGCGCAGCAACCCGAAGGGCACGGCGCGCG
AGATCTGGGTTCACATGAGCTGCGGCGAGTTCTTCGTCATGGAGCGTGACACCGTCACCCACGAGGTGCTGTCGTCGACC
GCGCTTGGCGGGGAGCACGCGGCGTGA

Upstream 100 bases:

>100_bases
TCAGCCGCCCCTTCGATCTCGATCGCTTCGCCAGCGGGCGGCTGATCGACGAAGCGGCCGGCTCCGGCATCGCGCACTGA
GACAAGAATCCGAGGCAATC

Downstream 100 bases:

>100_bases
GCGCCTCGCGTCTCGCCACCGGCGGCAGCGCCATCGACCGCTCGCGACCGATCCGCTTCAGCTTCGACGGCACAAGCGTG
GACGGTTTTGCCGGCGACAC

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MQLFPCPFCGPRDETEFHYGGDAGNARPDGAEVPIESWASYLYLRSNPKGTAREIWVHMSCGEFFVMERDTVTHEVLSST
ALGGEHAA

Sequences:

>Translated_88_residues
MQLFPCPFCGPRDETEFHYGGDAGNARPDGAEVPIESWASYLYLRSNPKGTAREIWVHMSCGEFFVMERDTVTHEVLSST
ALGGEHAA
>Mature_88_residues
MQLFPCPFCGPRDETEFHYGGDAGNARPDGAEVPIESWASYLYLRSNPKGTAREIWVHMSCGEFFVMERDTVTHEVLSST
ALGGEHAA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 9736; Mature: 9736

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLFPCPFCGPRDETEFHYGGDAGNARPDGAEVPIESWASYLYLRSNPKGTAREIWVHMS
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCCEEEEEECC
CGEFFVMERDTVTHEVLSSTALGGEHAA
CCEEEEEECCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQLFPCPFCGPRDETEFHYGGDAGNARPDGAEVPIESWASYLYLRSNPKGTAREIWVHMS
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCCEEEEEECC
CGEFFVMERDTVTHEVLSSTALGGEHAA
CCEEEEEECCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]