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The map label for this gene is ybfI [H]

Identifier: 13474301

GI number: 13474301

Start: 4093064

End: 4093936

Strand: Reverse

Name: ybfI [H]

Synonym: mll5158

Alternate gene names: 13474301

Gene position: 4093936-4093064 (Counterclockwise)

Preceding gene: 13474307

Following gene: 13474299

Centisome position: 58.18

GC content: 66.78

Gene sequence:

>873_bases
ATGTCGTTCGAACTAGACCGCCAGGCCTCTAGGGGTCTTGGACGTTTGTGCGCGGATGGGGCGGAGAACTGCATCATCTC
CGCACCCGACCCCGCCGGCATGGAGCGGATCGAGGCGCGCTTTCATGGCAGCGCCTTCGACCTGCATCGTCATGACACCT
ACGCGATCGGGGTGACCCTGCATGGCGTGCAGAGCTTTCGCTATCGCGGCGCAACGCGGCTAAGCCTGCCGGGCCAGATC
ATCGTGCTGCATCCCGACGAACTGCATGATGGCGGCGCCGGCACCGAGGACGGGTTGCGCTACAGGATGCTCTATCTCGA
ACCGTCGCTGATGCTGGACTGCCTTGGCGGCGCATCGTTGCCCTTCGTCAGGGACGCCGTGGTGCGGGACGACGCCTTCT
GCGCCATGCTGCTTTCGGCGCTGGGGCCGCTGCAGCAGGAACTCGACGAGCTGTTCGTCGACGATTTTCTCACGCAACTG
ATGCAGAGCCTGGCACGCCATGCCGGCCAGCCGGCAAAGCCGATGGCGAGAACCGCGTGGCGGGCGGCGGCGCTGGCGCG
GGACTATCTGACGGAGAACGCAACACGCGCCGTGCGCTCCGGCGAACTGGAGGCCGTCACCGGGCTCGACCGCTATGCCT
TGTCGAGGCATTTCCGCGCCGCCTTCTCGACCAGCCCGCATCGTTTCCTGGTGATGCGCCGGCTTCAGCGCGCGCGGCGG
ATGATCACCGCCGGCGAACCCCTGGCGCAGATCGCGGTCGAGGCCGGCTTCACCGACCAGAGCCATTTCAACAGGCAATT
CAAGAAAGCGTTCGGCATGACGCCGGGACGCTGGTCCTCGCTGATCCGGGACGCGGCCCCGGCGGCGGCCTGA

Upstream 100 bases:

>100_bases
AGACGGGCAAGTCTTCCCGCAAGACGATTGCAAATTTCGTATCGAACATGAGAAAAAGACCATTCGAGGTTAGGCCCCAA
TTGCGAGGCTGAATGAGACG

Downstream 100 bases:

>100_bases
TCAGTCGTCCGACTCGGCGTCGTCGTCGATCAGCACCAGCTCCTCGTTGGAGAGGTTGGCCTCGATGCGGGCCAGCAGCT
TGAACAGCGCCTTCTGGTCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSFELDRQASRGLGRLCADGAENCIISAPDPAGMERIEARFHGSAFDLHRHDTYAIGVTLHGVQSFRYRGATRLSLPGQI
IVLHPDELHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASLPFVRDAVVRDDAFCAMLLSALGPLQQELDELFVDDFLTQL
MQSLARHAGQPAKPMARTAWRAAALARDYLTENATRAVRSGELEAVTGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARR
MITAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDAAPAAA

Sequences:

>Translated_290_residues
MSFELDRQASRGLGRLCADGAENCIISAPDPAGMERIEARFHGSAFDLHRHDTYAIGVTLHGVQSFRYRGATRLSLPGQI
IVLHPDELHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASLPFVRDAVVRDDAFCAMLLSALGPLQQELDELFVDDFLTQL
MQSLARHAGQPAKPMARTAWRAAALARDYLTENATRAVRSGELEAVTGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARR
MITAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDAAPAAA
>Mature_289_residues
SFELDRQASRGLGRLCADGAENCIISAPDPAGMERIEARFHGSAFDLHRHDTYAIGVTLHGVQSFRYRGATRLSLPGQII
VLHPDELHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASLPFVRDAVVRDDAFCAMLLSALGPLQQELDELFVDDFLTQLM
QSLARHAGQPAKPMARTAWRAAALARDYLTENATRAVRSGELEAVTGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARRM
ITAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDAAPAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32014; Mature: 31883

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELDRQASRGLGRLCADGAENCIISAPDPAGMERIEARFHGSAFDLHRHDTYAIGVTL
CCCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEE
HGVQSFRYRGATRLSLPGQIIVLHPDELHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASL
HHHHHHHHCCCEEECCCCEEEEECCHHCCCCCCCCCCCCEEEEEEECHHHHHHHCCCCCC
PFVRDAVVRDDAFCAMLLSALGPLQQELDELFVDDFLTQLMQSLARHAGQPAKPMARTAW
CHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RAAALARDYLTENATRAVRSGELEAVTGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MITAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDAAPAAA
HHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFELDRQASRGLGRLCADGAENCIISAPDPAGMERIEARFHGSAFDLHRHDTYAIGVTL
CCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCEEEEEEEE
HGVQSFRYRGATRLSLPGQIIVLHPDELHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASL
HHHHHHHHCCCEEECCCCEEEEECCHHCCCCCCCCCCCCEEEEEEECHHHHHHHCCCCCC
PFVRDAVVRDDAFCAMLLSALGPLQQELDELFVDDFLTQLMQSLARHAGQPAKPMARTAW
CHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RAAALARDYLTENATRAVRSGELEAVTGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MITAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDAAPAAA
HHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]