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The map label for this gene is yliC [C]

Identifier: 13474273

GI number: 13474273

Start: 4062137

End: 4063096

Strand: Reverse

Name: yliC [C]

Synonym: mll5126

Alternate gene names: 13474273

Gene position: 4063096-4062137 (Counterclockwise)

Preceding gene: 13474274

Following gene: 13474272

Centisome position: 57.75

GC content: 62.4

Gene sequence:

>960_bases
ATGTCCTCACCCATCCTGAAGCTAATTGCCCAGCGCATCGCGCTGGGCATCCTCCTTTTGCTGGCCATTTCGGTCCTGAT
CTTCGCCGGCACGCAAATCCTGCCCGGCGATGTCGCACAAGCCATCCTCGGACAATCGGCGACGCCGGAGTCGCTCGCCA
ATTTGCGCGAGCAGCTCGGGCTGAACGATCCGGCCTATATCAGGTATTTCCACTGGCTCGGCGGCGTGCTGACCGGCGAC
CTCGGCACCGCTATGTCGAGCGGCCAGGATATCGCGACATCGATCAAGGGCCGGCTGTGGAACACGCTGTTCCTCGCATT
CTGGGCGGCGGTCGTGGCCGTACCGCTGGCGATCATCCTCGGCCTGATCGCCGTGCGCTACCGCAATGGCTGGGTCGACA
AGCTGATCTCCGGGCTGGCGCTCGCCTCGACCTCCTTTCCGGAATTCTTCATCGGCTATCTCCTGGTCTATTTCTTCGCG
GTGAAATGGCAGATCTTCCCCGCCATCTCGACCGTCTATGACGGTATGCCTTTCGGCGAGCGGATGCAGGCCATCGCGCT
GCCGGCGACGGCACTGACGCTGGTGGTGCTGGCCCACATGATGCGCATGACCCGTGCGGCGATCCTCAACGTCATGCAGT
CGGCCTATGTCGAGACGGCGGAGCTCAAGGGGCTCTCGGCCTTCGCCGTCATCCGCAAGCATGCCTTCCCGAACGCCATC
GCGCCGATCATCAACGTCGTCATGCTCAACCTCGCCTATCTCATCGTCGGCGTCGTCGTGGTCGAGGTGATCTTCGTGTA
TCCCGGGATGGGACAGTATCTCGTCGACCACGTCACCAAGCGCGACGTGCCCGTGGTGCAGGCGGTCGGCCTGATCTTCG
CCGCCGTCTATATCAGCCTCAACATCATCGCGGACATTGCGGCGATCGTCGCCAATCCGCGTCTCAGACACCCAAAGTGA

Upstream 100 bases:

>100_bases
GCCAAGGTCGATGGCTGGGTGGACGATCCGCACCAGGAACTGATGAACGGCTACGCCCTGGCAAAGTGCTGGCTGCAGGC
CTGAGTCCGGCTTTGCGGAG

Downstream 100 bases:

>100_bases
GGGGGCGGGCATGCTCGATATAAGACGCATCCCGATCCCGGCCCTGATCGGCCTGGTGCTGACCGCCCTGTTCGTGTTGG
CGGCGATCTTCGCACCATGG

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSSPILKLIAQRIALGILLLLAISVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNDPAYIRYFHWLGGVLTGD
LGTAMSSGQDIATSIKGRLWNTLFLAFWAAVVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYLLVYFFA
VKWQIFPAISTVYDGMPFGERMQAIALPATALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRKHAFPNAI
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK

Sequences:

>Translated_319_residues
MSSPILKLIAQRIALGILLLLAISVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNDPAYIRYFHWLGGVLTGD
LGTAMSSGQDIATSIKGRLWNTLFLAFWAAVVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYLLVYFFA
VKWQIFPAISTVYDGMPFGERMQAIALPATALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRKHAFPNAI
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK
>Mature_318_residues
SSPILKLIAQRIALGILLLLAISVLIFAGTQILPGDVAQAILGQSATPESLANLREQLGLNDPAYIRYFHWLGGVLTGDL
GTAMSSGQDIATSIKGRLWNTLFLAFWAAVVAVPLAIILGLIAVRYRNGWVDKLISGLALASTSFPEFFIGYLLVYFFAV
KWQIFPAISTVYDGMPFGERMQAIALPATALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRKHAFPNAIA
PIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISLNIIADIAAIVANPRLRHPK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=34.8242811501597, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=34.1176470588235, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=34.1772151898734, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1787761, Length=307, Percent_Identity=29.3159609120521, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=28.75, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=26.6423357664234, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=26.5957446808511, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34530; Mature: 34399

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPILKLIAQRIALGILLLLAISVLIFAGTQILPGDVAQAILGQSATPESLANLREQLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
LNDPAYIRYFHWLGGVLTGDLGTAMSSGQDIATSIKGRLWNTLFLAFWAAVVAVPLAIIL
CCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIAVRYRNGWVDKLISGLALASTSFPEFFIGYLLVYFFAVKWQIFPAISTVYDGMPFGE
HHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RMQAIALPATALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRKHAFPNAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NIIADIAAIVANPRLRHPK
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSPILKLIAQRIALGILLLLAISVLIFAGTQILPGDVAQAILGQSATPESLANLREQLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
LNDPAYIRYFHWLGGVLTGDLGTAMSSGQDIATSIKGRLWNTLFLAFWAAVVAVPLAIIL
CCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIAVRYRNGWVDKLISGLALASTSFPEFFIGYLLVYFFAVKWQIFPAISTVYDGMPFGE
HHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RMQAIALPATALTLVVLAHMMRMTRAAILNVMQSAYVETAELKGLSAFAVIRKHAFPNAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
APIINVVMLNLAYLIVGVVVVEVIFVYPGMGQYLVDHVTKRDVPVVQAVGLIFAAVYISL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NIIADIAAIVANPRLRHPK
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]