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The map label for this gene is secB

Identifier: 13473818

GI number: 13473818

Start: 3612178

End: 3612681

Strand: Reverse

Name: secB

Synonym: mll4541

Alternate gene names: 13473818

Gene position: 3612681-3612178 (Counterclockwise)

Preceding gene: 13473819

Following gene: 13473817

Centisome position: 51.35

GC content: 62.9

Gene sequence:

>504_bases
ATGGCCAGCAATGATGACGCGCCGGTCGGCGCAGCCAACGGAAACGGCAACACGGGAGCGCAGCCGTCGCTCAACGTGCT
CGCCCAGTATGTGAAGGACCTGTCCTTCGAAAGCCCCGGCGCGCCGAACTCGCTGCGCGGCCGCGACAAGGCGCCCGGCA
TCGCCATCAACGTCAATGTCAACGCCAACCCGCTGTCCGACAAGCAGTTCGACGTCAATTTGACGCTGAACGCCAAGGCC
TCCTTCGACCAGGAAGTGCTGTTCAATGTCGAGCTGGTCTATGGCGGCGTCTTCGCCATCTCCGGCTTCCCGCAGGAGCA
CATGCTGCCGATCCTTTTCATCGAATGCCCGCGGCTTCTGTTTCCCTTCGCCCGCCAGATCATCGCCGAGGCGACCCGCA
ATGGCGGCTTCCCGCCGCTGATGCTCGACCCGATCGATTTCGCGCAGATGTTCCAGCAGAAGATCGCCGAGGACCAGGCC
GCGTCGAAGGTCAAGGTGAGCTAA

Upstream 100 bases:

>100_bases
CCAAGGCGGCAAACCTTGTCTTGTCATGCCGACCATGGTAGCGAACGCCCGATTTCAATTCGGTCAGCAAGGCTGCCCAG
GGGAAAAGGATATAAGGCTC

Downstream 100 bases:

>100_bases
GGCTCGGCCTACAGGATTTCGCTGAAAAGCCCGGCCTCGCGCCGGGCTTTTTATTAGGGCACCGCCCCTCCCTTCGTCAT
CCTAGGGCGTAGCAGCCGCG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MASNDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNVNANPLSDKQFDVNLTLNAKA
SFDQEVLFNVELVYGGVFAISGFPQEHMLPILFIECPRLLFPFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQA
ASKVKVS

Sequences:

>Translated_167_residues
MASNDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNVNANPLSDKQFDVNLTLNAKA
SFDQEVLFNVELVYGGVFAISGFPQEHMLPILFIECPRLLFPFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQA
ASKVKVS
>Mature_166_residues
ASNDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNVNANPLSDKQFDVNLTLNAKAS
FDQEVLFNVELVYGGVFAISGFPQEHMLPILFIECPRLLFPFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQAA
SKVKVS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=122, Percent_Identity=35.2459016393443, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_RHILO (Q98DU8)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_105386.1
- ProteinModelPortal:   Q98DU8
- SMR:   Q98DU8
- GeneID:   1228047
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll4541
- NMPDR:   fig|266835.1.peg.3490
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17936; Mature: 17804

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNV
CCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE
NANPLSDKQFDVNLTLNAKASFDQEVLFNVELVYGGVFAISGFPQEHMLPILFIECPRLL
CCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCEEEECCCCHHHCCEEHEECCHHHH
FPFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQAASKVKVS
HHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCEECCC
>Mature Secondary Structure 
ASNDDAPVGAANGNGNTGAQPSLNVLAQYVKDLSFESPGAPNSLRGRDKAPGIAINVNV
CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE
NANPLSDKQFDVNLTLNAKASFDQEVLFNVELVYGGVFAISGFPQEHMLPILFIECPRLL
CCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCEEEECCCCHHHCCEEHEECCHHHH
FPFARQIIAEATRNGGFPPLMLDPIDFAQMFQQKIAEDQAASKVKVS
HHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968