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The map label for this gene is rimM

Identifier: 13473626

GI number: 13473626

Start: 3414936

End: 3415535

Strand: Reverse

Name: rimM

Synonym: mll4288

Alternate gene names: 13473626

Gene position: 3415535-3414936 (Counterclockwise)

Preceding gene: 13473629

Following gene: 13473625

Centisome position: 48.54

GC content: 66.67

Gene sequence:

>600_bases
ATGAGCAAGCCGCAAAACCCTGTCCAGATGGCCGTGATCGGCGCCGCCCATGGCATCAAGGGCGAACTCAGGGTGAAGAC
CTTCACCGGCGAGCCGATGGCGCTGGCCGATTATGGGCCGCTCTATGCCAGGGATGGCCGCGCCTTCCAGATCACAGACA
TAAGGCCGGCCAACACCGTCGTCGTGGTGCGTTTCAAGGGCATCAGCGACCGCAATGCCGCCGAAGCGCTCGCCGGTACG
GAATTGTTCGTCGACCGCTCGATGCTGCCGGACGATGGCGAGGAGGATGAATTCTACCATGCCGACCTGGTCGGACTGGA
AGTTCGCGACGATACCGGCACTGCGCTCGGCAAGGTGGTCGCGGTGCATAATTTCGGCGGCGGCGATATTCTCGACGTCA
CGCTCGCCGGCCGCAAGGGCGTGCTGATCCCGTTCACGCAGGCCGCCGTGCCTGATGTGTCGGTCGCCGAGGGCTTTGTC
CGCGTCGACCCGGTGGCGGCCGGGCTGGTCGAGGACGAGGACGGCGATGCGCCGCGCGAGGAAGACTTCGACCCGAAGGG
CAGGCCGCGCGGACCGCGCGACGCCGGGGGCAACCGGTGA

Upstream 100 bases:

>100_bases
GCATGGCGGCATTTTCTTGTATCCGGGTTAGGAAGCGGTGAAGAGCCCGTCATTGAAATGATGGCCGCGTGGGGTTAGAG
CAGGCCAAAGGATATTCGCG

Downstream 100 bases:

>100_bases
CATTCAAAGCCTCGGTGCTGACGCTCTACCCCGAGATGTTTCCGGGCGCGCTCGGCCTGTCGCTGGCGGGCCGCGCGCTC
GAGGCCGGCACCTGGTCGCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTVVVVRFKGISDRNAAEALAGT
ELFVDRSMLPDDGEEDEFYHADLVGLEVRDDTGTALGKVVAVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFV
RVDPVAAGLVEDEDGDAPREEDFDPKGRPRGPRDAGGNR

Sequences:

>Translated_199_residues
MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTVVVVRFKGISDRNAAEALAGT
ELFVDRSMLPDDGEEDEFYHADLVGLEVRDDTGTALGKVVAVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFV
RVDPVAAGLVEDEDGDAPREEDFDPKGRPRGPRDAGGNR
>Mature_198_residues
SKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTVVVVRFKGISDRNAAEALAGTE
LFVDRSMLPDDGEEDEFYHADLVGLEVRDDTGTALGKVVAVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFVR
VDPVAAGLVEDEDGDAPREEDFDPKGRPRGPRDAGGNR

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=155, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RHILO (Q98EE0)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_105194.1
- ProteinModelPortal:   Q98EE0
- SMR:   Q98EE0
- GeneID:   1227855
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll4288
- NMPDR:   fig|266835.1.peg.3298
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21156; Mature: 21025

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTV
CCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEECCCCEEECCCCEEEEEECCCCCEE
VVVRFKGISDRNAAEALAGTELFVDRSMLPDDGEEDEFYHADLVGLEVRDDTGTALGKVV
EEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEE
AVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFVRVDPVAAGLVEDEDGDAPRE
EEEECCCCCEEEEEECCCCCEEEEEHHCCCCCCHHHCCEEEECCEEECEEECCCCCCCCC
EDFDPKGRPRGPRDAGGNR
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTV
CCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEECCCCEEECCCCEEEEEECCCCCEE
VVVRFKGISDRNAAEALAGTELFVDRSMLPDDGEEDEFYHADLVGLEVRDDTGTALGKVV
EEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEE
AVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFVRVDPVAAGLVEDEDGDAPRE
EEEECCCCCEEEEEECCCCCEEEEEHHCCCCCCHHHCCEEEECCEEECEEECCCCCCCCC
EDFDPKGRPRGPRDAGGNR
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968