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The map label for this gene is ydaM [H]

Identifier: 13473613

GI number: 13473613

Start: 3404695

End: 3405891

Strand: Reverse

Name: ydaM [H]

Synonym: mll4271

Alternate gene names: 13473613

Gene position: 3405891-3404695 (Counterclockwise)

Preceding gene: 13473614

Following gene: 13473612

Centisome position: 48.41

GC content: 67.17

Gene sequence:

>1197_bases
TTGGACACCGGCCTGTTGATAGCGCTGCTCAATCCGACGATCGCGCTGGCCCTCGGCGCGGCCTTCTTCGTGCTATGGGC
CTATCAGCGCCACCGCCCCTATCTGGCCGTGCTGGCGCTCAGCTACTGTGCTTCGGCACCGGGCTTTCTGTTCCAGTATT
TCACCTTGCCCATCGGCATGGTGCTGACCAAGCTGGTGTCCAACATCTGCTTCGCCATTGCCGGCTGCTGCCTGTCGGGC
GCCATCGTCGCCCGCTATGGCCGCAAGGTGCCCTATGTCGGGATCGGCGTGCTGGCCGGTGGTGGACTGGCCTCGTTCTG
CTGGTTCCTGTTCGTGGCGCCGGATCTCACCTGGCGTATCCTGGCGATGAATTTCGCCTTCGGGGGTCTCAGCCTTCTGA
TCGGCGCCGAATTGCGACCGGTGCGCAACAACGGCCCGAGCGAGAAAATCCTGTTCGTGCTGTCGCTGCTGTCGGGCCTC
AACTTCTTCGTGCGCACCCTTGTCGTCGTCATCGCGCACGGGCCGTTCACCAGCTATGACGGGTTCTACAGCTCCTCCTA
CTGGACGACGGCGCTGCTGTCGCATGCGCTGCTGTCGCTGCTGATCGCGCTTTGCCTGTTCACCGCCGCGGCCCTCGACG
TGATGAAGGCGCTGAAGGCCGAGACGCATACCGATCCGCTCTCGGGCCTGCTCAACCGGCGCGGCTTCGAGGAGCGCGCG
GCCCAGCTTCTGCGACACTGCGCAATGGCCAGGTTCCCGGTCGCGCTGGTGCTGGCCGACCTCGATCATTTCAAGGCGCT
CAACGATGTGCACGGGCATGCCGCCGGTGATCGGGTGATTGCCGATTTCGCCGCCAAGCTCCGGTCGGCCGCCGGCGCGC
GCGGCGCTGCCGGACGCATCGGCGGCGAGGAGTTCGCCGTGCTCCTGCCGTTGACCGATCTCGCCGCCGCGCGGCTGTTC
GCCGAGGCGGTGCGCACGCTCTACTCGGCCGGCGGCGTCGACGGGCTTCCCGCCGGCACCAAGGTCACCGCCAGTTTCGG
CGTGGCGGCCCGCAGCGGCGAGGAAGCGCTGGAGCCGCTGATGCGGCGTGCCGACGAGGCGCTCTACAAGGCCAAGAAAA
ACGGCCGCGACAGCGTGCGCCTGTCCTATGAACGGCCCGAAACGCTGGTCGTGCCGGAGCCGTCCAGGGCCGGCTGA

Upstream 100 bases:

>100_bases
TTCATTCACGCGGTCCGCATATTCGGCCGCGCTTAACCGCTTGTTTGGGCTTGCGCTCTAAGCTCTTCCCTGACGTCAAG
CGAGGGGAAGTCACCGTCCT

Downstream 100 bases:

>100_bases
AGCCGTGCGTCCCAGCCCACGTTAACGTCTTTTTCGCCCGTCGGTGTTTAGCTAAGGCGCGGGGTGCGAAAGAGATGAGC
GGCGCGAACTTCATCCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MDTGLLIALLNPTIALALGAAFFVLWAYQRHRPYLAVLALSYCASAPGFLFQYFTLPIGMVLTKLVSNICFAIAGCCLSG
AIVARYGRKVPYVGIGVLAGGGLASFCWFLFVAPDLTWRILAMNFAFGGLSLLIGAELRPVRNNGPSEKILFVLSLLSGL
NFFVRTLVVVIAHGPFTSYDGFYSSSYWTTALLSHALLSLLIALCLFTAAALDVMKALKAETHTDPLSGLLNRRGFEERA
AQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIADFAAKLRSAAGARGAAGRIGGEEFAVLLPLTDLAAARLF
AEAVRTLYSAGGVDGLPAGTKVTASFGVAARSGEEALEPLMRRADEALYKAKKNGRDSVRLSYERPETLVVPEPSRAG

Sequences:

>Translated_398_residues
MDTGLLIALLNPTIALALGAAFFVLWAYQRHRPYLAVLALSYCASAPGFLFQYFTLPIGMVLTKLVSNICFAIAGCCLSG
AIVARYGRKVPYVGIGVLAGGGLASFCWFLFVAPDLTWRILAMNFAFGGLSLLIGAELRPVRNNGPSEKILFVLSLLSGL
NFFVRTLVVVIAHGPFTSYDGFYSSSYWTTALLSHALLSLLIALCLFTAAALDVMKALKAETHTDPLSGLLNRRGFEERA
AQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIADFAAKLRSAAGARGAAGRIGGEEFAVLLPLTDLAAARLF
AEAVRTLYSAGGVDGLPAGTKVTASFGVAARSGEEALEPLMRRADEALYKAKKNGRDSVRLSYERPETLVVPEPSRAG
>Mature_398_residues
MDTGLLIALLNPTIALALGAAFFVLWAYQRHRPYLAVLALSYCASAPGFLFQYFTLPIGMVLTKLVSNICFAIAGCCLSG
AIVARYGRKVPYVGIGVLAGGGLASFCWFLFVAPDLTWRILAMNFAFGGLSLLIGAELRPVRNNGPSEKILFVLSLLSGL
NFFVRTLVVVIAHGPFTSYDGFYSSSYWTTALLSHALLSLLIALCLFTAAALDVMKALKAETHTDPLSGLLNRRGFEERA
AQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIADFAAKLRSAAGARGAAGRIGGEEFAVLLPLTDLAAARLF
AEAVRTLYSAGGVDGLPAGTKVTASFGVAARSGEEALEPLMRRADEALYKAKKNGRDSVRLSYERPETLVVPEPSRAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=40, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=37.2781065088757, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1787262, Length=201, Percent_Identity=32.3383084577114, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=30, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=30.5882352941176, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=33.7142857142857, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=33.5329341317365, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=218, Percent_Identity=26.605504587156, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=30.8139534883721, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=193, Percent_Identity=29.0155440414508, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=29.940119760479, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=194, Percent_Identity=24.7422680412371, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=28.8343558282209, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 42499; Mature: 42499

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTGLLIALLNPTIALALGAAFFVLWAYQRHRPYLAVLALSYCASAPGFLFQYFTLPIGM
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
VLTKLVSNICFAIAGCCLSGAIVARYGRKVPYVGIGVLAGGGLASFCWFLFVAPDLTWRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCHHHHHHHHHHCCCCHHHH
LAMNFAFGGLSLLIGAELRPVRNNGPSEKILFVLSLLSGLNFFVRTLVVVIAHGPFTSYD
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GFYSSSYWTTALLSHALLSLLIALCLFTAAALDVMKALKAETHTDPLSGLLNRRGFEERA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
AQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIADFAAKLRSAAGARGAAGRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GGEEFAVLLPLTDLAAARLFAEAVRTLYSAGGVDGLPAGTKVTASFGVAARSGEEALEPL
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHCCHHCCCHHHHHHH
MRRADEALYKAKKNGRDSVRLSYERPETLVVPEPSRAG
HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure
MDTGLLIALLNPTIALALGAAFFVLWAYQRHRPYLAVLALSYCASAPGFLFQYFTLPIGM
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
VLTKLVSNICFAIAGCCLSGAIVARYGRKVPYVGIGVLAGGGLASFCWFLFVAPDLTWRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCHHHHHHHHHHCCCCHHHH
LAMNFAFGGLSLLIGAELRPVRNNGPSEKILFVLSLLSGLNFFVRTLVVVIAHGPFTSYD
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GFYSSSYWTTALLSHALLSLLIALCLFTAAALDVMKALKAETHTDPLSGLLNRRGFEERA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
AQLLRHCAMARFPVALVLADLDHFKALNDVHGHAAGDRVIADFAAKLRSAAGARGAAGRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GGEEFAVLLPLTDLAAARLFAEAVRTLYSAGGVDGLPAGTKVTASFGVAARSGEEALEPL
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHCCHHCCCHHHHHHH
MRRADEALYKAKKNGRDSVRLSYERPETLVVPEPSRAG
HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]