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The map label for this gene is ugpB [H]

Identifier: 13473024

GI number: 13473024

Start: 2824977

End: 2826329

Strand: Reverse

Name: ugpB [H]

Synonym: mll3503

Alternate gene names: 13473024

Gene position: 2826329-2824977 (Counterclockwise)

Preceding gene: 13473026

Following gene: 13473023

Centisome position: 40.17

GC content: 61.12

Gene sequence:

>1353_bases
ATGACCATGATCAAGCGGGGCTTTGCTGCCCTTGCCGCTGGTGCGCTCAGCACCGCGCTGGCGATGCCTGCTTCAGCAGA
ACCAGTAAAATTCGACTTCTGGTTCGGCCTTTCGGGCGACCTTGCCCGTGTCGTCGACACGCTGTGCAAGAACTTCAACG
CCTCGCAGAAGGACTATGAAGTCGTCTGCACCAGCCAGGGCAATTACGACGCCACGCTGCAGAACACCATCGCGGCCTTC
CGCGCCGGCAAGCAGCCGGCCGTCGTCCAGGTCTATGACGTCGGCACCGCCACCATGATGCTGTCGGGCGCCTACAAGCC
CGCCGACAAGCTGATGGAAGAGAACGGCTACAAGATCGACTACGCCGACTATTTCCCCGGCATTGCGCGCTACTACGCCA
CGTCGAAGGGCGAGATGCTGTCCTTCCCGTTCAATTCCTCGACCCCGCTGATGTACTGGAACAAGGACGCCTTCGCCAAG
ATCGGCAAGACCGAAGCGCCCAAGACGTGGGAAGATGTCGGCGCCGACCTCAAGGCGTTGAAGGACGCCGGCTACGAGTG
CCCGATGGCCATCAACATCTCTGCCAACGAAAGCTGGCAGCTGATGGAGCAGTTCTCGGCGCTCCACAACCAGCCGATCG
CCACCAAGAACAATGGTTATGACGGTCTCGACGCGCGTCTGGAAGTCAACAAGACCAAGTTCGTCCAGTACGTCACCGAT
CTCAAGAAGTGGTATGACGCCGGCCTGATCAAGATCAAATCCAAGGATCTCGGCCAGGACATGGTCCAGGCCTTCGCTTC
AGGCACCTGCCAAGTCATCCTGACCTCAGTCGGCGACCACGGCACGGTCGGCAGGACCCAGAAGGAAGGCATGAAGTGGG
ATGTCGCCGAACTGCCGGTCTATGCCGGCACGGAGCGTAAGAATTCGCTGGTCGGCGGCGCCTCGCTGTGGGTGCTCTCC
GGGAAGTCGGATGCCGAATACAAGGGCGCTGCCGCCTTCCTCAACTTCATCCACGATCCCAAGACCGCGCTGTTCTGGTC
GACCAACACCGGCTACATCCCGGTGACGAAGTCGGGTTTCGACTACATGAAGGGCCAGGGCTTCTACGACAAGGCGCCCT
ACAAGGGTCGTGAAGTCGCCATCGCCAGCCTGACCGCGTCCGAGCCGACCGAAATCACCCGCGGCGTCCGGCTGGGCAAC
TTCACCCAGATCCGCGCCGAGTTCGGCACGCAGATGCAGGCGATCTTCGCCAACAAGGTCAGCGTCCAGGAAGGCCTCGA
CACGCTGGTCAAGAATGGCGATGCCATCCTCGACCGCTTCCAGCAGACCTATCCGGGCAAGACCCTGCCCTGA

Upstream 100 bases:

>100_bases
AGGCCGGAGAGCCACAACAGAACTGTCACATACCTTCTCTAAGAGAGCGGGCAAGGACTTGCGCAAGACCCTTGTCACCA
GCCACTCAAGAGGGAAAACC

Downstream 100 bases:

>100_bases
TCGCCGAAACGTCAAGGCCGCCCGCCGAGATTCGACGGGCGGCCATTTCATATCTAGTCTTCCGCTGAGAAAGCGGGCTG
ACGGTTCAATGGCATCGGCG

Product: ugpB, sn-glycerol 3-phosphate transport system; periplasmic binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTMIKRGFAALAAGALSTALAMPASAEPVKFDFWFGLSGDLARVVDTLCKNFNASQKDYEVVCTSQGNYDATLQNTIAAF
RAGKQPAVVQVYDVGTATMMLSGAYKPADKLMEENGYKIDYADYFPGIARYYATSKGEMLSFPFNSSTPLMYWNKDAFAK
IGKTEAPKTWEDVGADLKALKDAGYECPMAINISANESWQLMEQFSALHNQPIATKNNGYDGLDARLEVNKTKFVQYVTD
LKKWYDAGLIKIKSKDLGQDMVQAFASGTCQVILTSVGDHGTVGRTQKEGMKWDVAELPVYAGTERKNSLVGGASLWVLS
GKSDAEYKGAAAFLNFIHDPKTALFWSTNTGYIPVTKSGFDYMKGQGFYDKAPYKGREVAIASLTASEPTEITRGVRLGN
FTQIRAEFGTQMQAIFANKVSVQEGLDTLVKNGDAILDRFQQTYPGKTLP

Sequences:

>Translated_450_residues
MTMIKRGFAALAAGALSTALAMPASAEPVKFDFWFGLSGDLARVVDTLCKNFNASQKDYEVVCTSQGNYDATLQNTIAAF
RAGKQPAVVQVYDVGTATMMLSGAYKPADKLMEENGYKIDYADYFPGIARYYATSKGEMLSFPFNSSTPLMYWNKDAFAK
IGKTEAPKTWEDVGADLKALKDAGYECPMAINISANESWQLMEQFSALHNQPIATKNNGYDGLDARLEVNKTKFVQYVTD
LKKWYDAGLIKIKSKDLGQDMVQAFASGTCQVILTSVGDHGTVGRTQKEGMKWDVAELPVYAGTERKNSLVGGASLWVLS
GKSDAEYKGAAAFLNFIHDPKTALFWSTNTGYIPVTKSGFDYMKGQGFYDKAPYKGREVAIASLTASEPTEITRGVRLGN
FTQIRAEFGTQMQAIFANKVSVQEGLDTLVKNGDAILDRFQQTYPGKTLP
>Mature_449_residues
TMIKRGFAALAAGALSTALAMPASAEPVKFDFWFGLSGDLARVVDTLCKNFNASQKDYEVVCTSQGNYDATLQNTIAAFR
AGKQPAVVQVYDVGTATMMLSGAYKPADKLMEENGYKIDYADYFPGIARYYATSKGEMLSFPFNSSTPLMYWNKDAFAKI
GKTEAPKTWEDVGADLKALKDAGYECPMAINISANESWQLMEQFSALHNQPIATKNNGYDGLDARLEVNKTKFVQYVTDL
KKWYDAGLIKIKSKDLGQDMVQAFASGTCQVILTSVGDHGTVGRTQKEGMKWDVAELPVYAGTERKNSLVGGASLWVLSG
KSDAEYKGAAAFLNFIHDPKTALFWSTNTGYIPVTKSGFDYMKGQGFYDKAPYKGREVAIASLTASEPTEITRGVRLGNF
TQIRAEFGTQMQAIFANKVSVQEGLDTLVKNGDAILDRFQQTYPGKTLP

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=417, Percent_Identity=39.3285371702638, Blast_Score=302, Evalue=2e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49289; Mature: 49158

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMIKRGFAALAAGALSTALAMPASAEPVKFDFWFGLSGDLARVVDTLCKNFNASQKDYE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
VVCTSQGNYDATLQNTIAAFRAGKQPAVVQVYDVGTATMMLSGAYKPADKLMEENGYKID
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHCCCCEEE
YADYFPGIARYYATSKGEMLSFPFNSSTPLMYWNKDAFAKIGKTEAPKTWEDVGADLKAL
HHHHCCHHHHHHHCCCCCEEECCCCCCCCEEEECCHHHHHCCCCCCCCCHHHHCHHHHHH
KDAGYECPMAINISANESWQLMEQFSALHNQPIATKNNGYDGLDARLEVNKTKFVQYVTD
HHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHH
LKKWYDAGLIKIKSKDLGQDMVQAFASGTCQVILTSVGDHGTVGRTQKEGMKWDVAELPV
HHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCEEHHHCCE
YAGTERKNSLVGGASLWVLSGKSDAEYKGAAAFLNFIHDPKTALFWSTNTGYIPVTKSGF
EECCCCCCCEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCC
DYMKGQGFYDKAPYKGREVAIASLTASEPTEITRGVRLGNFTQIRAEFGTQMQAIFANKV
HHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHH
SVQEGLDTLVKNGDAILDRFQQTYPGKTLP
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TMIKRGFAALAAGALSTALAMPASAEPVKFDFWFGLSGDLARVVDTLCKNFNASQKDYE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
VVCTSQGNYDATLQNTIAAFRAGKQPAVVQVYDVGTATMMLSGAYKPADKLMEENGYKID
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHCCCCEEE
YADYFPGIARYYATSKGEMLSFPFNSSTPLMYWNKDAFAKIGKTEAPKTWEDVGADLKAL
HHHHCCHHHHHHHCCCCCEEECCCCCCCCEEEECCHHHHHCCCCCCCCCHHHHCHHHHHH
KDAGYECPMAINISANESWQLMEQFSALHNQPIATKNNGYDGLDARLEVNKTKFVQYVTD
HHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHH
LKKWYDAGLIKIKSKDLGQDMVQAFASGTCQVILTSVGDHGTVGRTQKEGMKWDVAELPV
HHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCEEHHHCCE
YAGTERKNSLVGGASLWVLSGKSDAEYKGAAAFLNFIHDPKTALFWSTNTGYIPVTKSGF
EECCCCCCCEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCC
DYMKGQGFYDKAPYKGREVAIASLTASEPTEITRGVRLGNFTQIRAEFGTQMQAIFANKV
HHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHH
SVQEGLDTLVKNGDAILDRFQQTYPGKTLP
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA