Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 13473017

GI number: 13473017

Start: 2817136

End: 2817687

Strand: Reverse

Name: rpoE [C]

Synonym: mll3493

Alternate gene names: 13473017

Gene position: 2817687-2817136 (Counterclockwise)

Preceding gene: 13473021

Following gene: 13473016

Centisome position: 40.05

GC content: 65.22

Gene sequence:

>552_bases
GTGAGCGGCAAGGACGAGGCCGAGCTTTCCCGGCTGTTGCGGGCCGCGATCGCCGGAGATGAAAAGGCCTATGCCGACTT
TCTGCACCGGATTGCCGCGCTGGTGCGTGGCTTTGTCCGGCGCAAGATCGTGCAGGGCGGAGTCGATCCCGAGGATGTCG
TGCAGGAAACCTTGCTGGCCATTCATGTGAAACGGCATACCTGGCGCCAGGACGCGCCGGTGCTGCCGTGGATCTATGCG
ATTGCCCGCTTCAAGCTGATCGATGCGTTCCGGCGGCGCGGTCGGCGCATCGAAATCGATGTCGACGATATCGCCGAGAC
CTTCGCCGAACCGGAAACCGAAACCGTCAGCGAGCGCGACATCAACAGGGCCCTGGACGGGCTGCCGCCGGCGCAGCGTT
CGGTGGTTTCGGCGGTATCCGTGGAAGGCCGCTCGATCGGCGAGACGGCGGCGAAGTTCGGTATCAGCGAGACGGCGGTG
CGTGTGTCGCTGCATCGCGGGCTAGCCGCCATAGCCAAGCGATTCGGACAGGGGCGAGCTGGGCGGGAATGA

Upstream 100 bases:

>100_bases
GCAAACTTTCGTGATTTGCCCGTAGTTTGGCTTGGACATTATTTCGCCGGCCACGTAACAAATCAGTGCCGAGGCACGAA
AATCGGGGGAGTGAACTCTT

Downstream 100 bases:

>100_bases
CATGAGGACCGAGGATCTCATCAAGGCGCTCGACGCCGATGCAAGCAGCAAGGCGATGCCGCTGCGCTCGGCCTGGTGGC
TGGCGGCTGGCGGGGCCATT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor SigD; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigM; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSGKDEAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLAIHVKRHTWRQDAPVLPWIYA
IARFKLIDAFRRRGRRIEIDVDDIAETFAEPETETVSERDINRALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAV
RVSLHRGLAAIAKRFGQGRAGRE

Sequences:

>Translated_183_residues
MSGKDEAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLAIHVKRHTWRQDAPVLPWIYA
IARFKLIDAFRRRGRRIEIDVDDIAETFAEPETETVSERDINRALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAV
RVSLHRGLAAIAKRFGQGRAGRE
>Mature_182_residues
SGKDEAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLAIHVKRHTWRQDAPVLPWIYAI
ARFKLIDAFRRRGRRIEIDVDDIAETFAEPETETVSERDINRALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAVR
VSLHRGLAAIAKRFGQGRAGRE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20280; Mature: 20149

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKDEAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLA
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IHVKRHTWRQDAPVLPWIYAIARFKLIDAFRRRGRRIEIDVDDIAETFAEPETETVSERD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCHHHHHHHH
INRALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAVRVSLHRGLAAIAKRFGQGRA
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
GRE
CCC
>Mature Secondary Structure 
SGKDEAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLA
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IHVKRHTWRQDAPVLPWIYAIARFKLIDAFRRRGRRIEIDVDDIAETFAEPETETVSERD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCHHHHHHHH
INRALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAVRVSLHRGLAAIAKRFGQGRA
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
GRE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA