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The map label for this gene is rfaC [H]

Identifier: 13472313

GI number: 13472313

Start: 2077319

End: 2078293

Strand: Direct

Name: rfaC [H]

Synonym: mlr2567

Alternate gene names: 13472313

Gene position: 2077319-2078293 (Clockwise)

Preceding gene: 13472312

Following gene: 13472317

Centisome position: 29.52

GC content: 66.87

Gene sequence:

>975_bases
ATGAAGGTTCTGATCGTCAAGACATCGTCCATGGGCGATGTCATCCACACCTTTCCGGCCGTCGAGGATGCCAGCCTGCA
CCGGCCGGACATTTCCTTCGACTGGTGCGTCGAGGAGGCGTTTGCCGGCATTGTCGCCCTGCACCCGGCGATCGCTGGGA
TTCACACGGTGGCGATCCGGCGCTGGCGCAAGGCGCTGTTCAACGGCGGAACCTGGCGTGAGGCGGCCGCGCTGCGCCGA
ACCTTGCGCGAATGCCGCTTCGATCTGGTCATCGACGCACAGGGTCTGCTGAAATCGGCCCTGGTGGCGCGGCAGGCGCG
CGCACCGATCGCCGGCTTCGACCGGTCGAGTGCACGCGAACCCTCTGCGACCCTGTTCTACGACGTCACCTACGGCGTGC
CGCGCAACCTGCACGCCATCGAGCGGACGCGGCGGCTGTTCGGGCTGGCGCTTGGCTACCAGCCCGATCTGTCGACGCTC
GCTTCAGGCATCGTGCCACCACCCGGTGCTCTCGCCGGCATCACCGGAAAGACCGCCTTCCTGTTGCACGGCACCAGCCG
CGAGGACAAGAAATGGCCTGTTGAAGACTGGATCGGAACCGCCCGCCTGCTGGTCGAGCGCGGCATGACCCCGGTCACCA
CCTGGTCGAACGAACGTGAGAAGTCTGTTGCCGAAGCCATCGCCAGGGCCGTGCCGTCCACGGTCGTGGTGCCAAAATCG
CCGCTGGCCGACATCGCCGCCATCCTCGGACGCTCGACGCTGGTCATCGGCGCCGACACCGGCCTGACCCACCTCGCCAG
CGCCTTCGGCCTGCCGACGGTTGCTGTATTTTTGGCGACGGAGCCGGGTTTGACCGGCCCGCGCGGGCCGTATGCGTCGA
CGCTGCTGGCCGTGCCTGGTGGACGTCTGACGCCGGCTGAGGTCGTGGCGGAGGCGGACAGCCTGCTTAATCTTAAATTG
CAGGCGCCGGCTTAG

Upstream 100 bases:

>100_bases
AGAAGGTCTGCCCGCTCGGCCATCTCAACTGCCTGAAGACATTGGAAGTCGGCCAAGTCGCTACAGCGGCGGAGCGACTG
CTGGAACTCCCGGCCACGGC

Downstream 100 bases:

>100_bases
GACCTTTTCAGAATTCGCTCTGGCGAGTCGAATAGCGTGGTTTTCGGGTCGCCCCGCGACGAGCGGAGCGTACTTTAAAG
TACGTGAACACCGGAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKVLIVKTSSMGDVIHTFPAVEDASLHRPDISFDWCVEEAFAGIVALHPAIAGIHTVAIRRWRKALFNGGTWREAAALRR
TLRECRFDLVIDAQGLLKSALVARQARAPIAGFDRSSAREPSATLFYDVTYGVPRNLHAIERTRRLFGLALGYQPDLSTL
ASGIVPPPGALAGITGKTAFLLHGTSREDKKWPVEDWIGTARLLVERGMTPVTTWSNEREKSVAEAIARAVPSTVVVPKS
PLADIAAILGRSTLVIGADTGLTHLASAFGLPTVAVFLATEPGLTGPRGPYASTLLAVPGGRLTPAEVVAEADSLLNLKL
QAPA

Sequences:

>Translated_324_residues
MKVLIVKTSSMGDVIHTFPAVEDASLHRPDISFDWCVEEAFAGIVALHPAIAGIHTVAIRRWRKALFNGGTWREAAALRR
TLRECRFDLVIDAQGLLKSALVARQARAPIAGFDRSSAREPSATLFYDVTYGVPRNLHAIERTRRLFGLALGYQPDLSTL
ASGIVPPPGALAGITGKTAFLLHGTSREDKKWPVEDWIGTARLLVERGMTPVTTWSNEREKSVAEAIARAVPSTVVVPKS
PLADIAAILGRSTLVIGADTGLTHLASAFGLPTVAVFLATEPGLTGPRGPYASTLLAVPGGRLTPAEVVAEADSLLNLKL
QAPA
>Mature_324_residues
MKVLIVKTSSMGDVIHTFPAVEDASLHRPDISFDWCVEEAFAGIVALHPAIAGIHTVAIRRWRKALFNGGTWREAAALRR
TLRECRFDLVIDAQGLLKSALVARQARAPIAGFDRSSAREPSATLFYDVTYGVPRNLHAIERTRRLFGLALGYQPDLSTL
ASGIVPPPGALAGITGKTAFLLHGTSREDKKWPVEDWIGTARLLVERGMTPVTTWSNEREKSVAEAIARAVPSTVVVPKS
PLADIAAILGRSTLVIGADTGLTHLASAFGLPTVAVFLATEPGLTGPRGPYASTLLAVPGGRLTPAEVVAEADSLLNLKL
QAPA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=295, Percent_Identity=42.7118644067797, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 34559; Mature: 34559

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLIVKTSSMGDVIHTFPAVEDASLHRPDISFDWCVEEAFAGIVALHPAIAGIHTVAIR
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRKALFNGGTWREAAALRRTLRECRFDLVIDAQGLLKSALVARQARAPIAGFDRSSARE
HHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PSATLFYDVTYGVPRNLHAIERTRRLFGLALGYQPDLSTLASGIVPPPGALAGITGKTAF
CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCCEEE
LLHGTSREDKKWPVEDWIGTARLLVERGMTPVTTWSNEREKSVAEAIARAVPSTVVVPKS
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
PLADIAAILGRSTLVIGADTGLTHLASAFGLPTVAVFLATEPGLTGPRGPYASTLLAVPG
CHHHHHHHHCCCEEEEECCCCHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHEEEECCC
GRLTPAEVVAEADSLLNLKLQAPA
CCCCHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MKVLIVKTSSMGDVIHTFPAVEDASLHRPDISFDWCVEEAFAGIVALHPAIAGIHTVAIR
CEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWRKALFNGGTWREAAALRRTLRECRFDLVIDAQGLLKSALVARQARAPIAGFDRSSARE
HHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PSATLFYDVTYGVPRNLHAIERTRRLFGLALGYQPDLSTLASGIVPPPGALAGITGKTAF
CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEECCCCCEEE
LLHGTSREDKKWPVEDWIGTARLLVERGMTPVTTWSNEREKSVAEAIARAVPSTVVVPKS
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
PLADIAAILGRSTLVIGADTGLTHLASAFGLPTVAVFLATEPGLTGPRGPYASTLLAVPG
CHHHHHHHHCCCEEEEECCCCHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHEEEECCC
GRLTPAEVVAEADSLLNLKLQAPA
CCCCHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]