Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
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Accession | NC_002678 |
Length | 7,036,071 |
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The map label for this gene is lpsC [H]
Identifier: 13472306
GI number: 13472306
Start: 2070986
End: 2071780
Strand: Direct
Name: lpsC [H]
Synonym: mlr2557
Alternate gene names: 13472306
Gene position: 2070986-2071780 (Clockwise)
Preceding gene: 13472305
Following gene: 13472311
Centisome position: 29.43
GC content: 61.64
Gene sequence:
>795_bases ATGACTCGATTTGCAAGCCCGGTCTCGGCGCTTATCATCTGCGTGAACGAGGCCGATATGATCGGCCCGTGCCTGGAAAG CATCGACTTCTGCGCCGAGATCATCATCGTCGATTCCGGTTCGACGGATGGCACGATCGAATGCGTGAAAAGCTACATCG CCAAGGGCTACCCGATAAGGCTCTTGCACAATGACTGGCCGGGGTTTCCCCGTCAGCGGCAATTCTCGCTCGACCACGCA ACCCAGCCCTGGTGCCTCTCGATCGACCCGGACGAGCGCGTCGACGACCAGTTGCGGCAGTCGATCGTGGCCATCACGCA GGCCGCCGACGACAAGATCAGCGGCTGGTACATCCGCCGCCGCGATTGGCTGAAAGGCTACGGCTATGCGCACCGCTGGG TGCTGCACAACAGGCTGATGCGGCTTTTCCGCCGGGAAGGTGCCACCATCGATCTCACCGCGCGGGTGCACGAAGCCTTC CAGGTGCCGGGCGAGACCGGTACGGTCGAAGACGGTGTGCTGCTGCATCGTCGTGAAATATCGGTCGAGGAGGATCTTGC CCGGGCCAACGCCTATTCCAGCCTCAAGGCCGTCACGCTGGTCGAGAAGGGCAAGAAGCCCGGCCTGGTGCGGCTGGTGC TGTCGCCGTTGGGCAACTTCCTGAAATTCTACCTGGCCAAGCGCTATTTCCTGTGCGGCCGGCACGGCTTCGTCTACTCG ATGTCGGTGATGATCTATTCCTTCGCCACGGAGGCAAAGCTCTACGAAGCCTCGGAACGCGACGATCCCGTGTGA
Upstream 100 bases:
>100_bases ATCCGGGAAAAGTGTGTAACGGTTTTCCGCGCGGGATTGCTTGGGTACAGATGGCGAAAGCAGCGTTGCTCTGGGGGCGG CCCGCCATGGGAAGGGGACC
Downstream 100 bases:
>100_bases GCGGTCGGGCCTGGATCAGGACCTGTTGTCCCGGCCGAGCGTTTCAATGGCTGCGAGCAGGTCACCGAGCTCGCTGCTGT CCCGCAGGGGCCTGATGGCG
Product: glucosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHA TQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAF QVPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS MSVMIYSFATEAKLYEASERDDPV
Sequences:
>Translated_264_residues MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHA TQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAF QVPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS MSVMIYSFATEAKLYEASERDDPV >Mature_263_residues TRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHAT QPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQ VPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYSM SVMIYSFATEAKLYEASERDDPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 30009; Mature: 29878
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIR CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEE LLHNDWPGFPRQRQFSLDHATQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRR EEECCCCCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEH RDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQVPGETGTVEDGVLLHRREI HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCEEEEEHHC SVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH MSVMIYSFATEAKLYEASERDDPV HHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIR CCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEE LLHNDWPGFPRQRQFSLDHATQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRR EEECCCCCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEH RDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQVPGETGTVEDGVLLHRREI HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCEEEEEHHC SVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH MSVMIYSFATEAKLYEASERDDPV HHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11157937; 11481430 [H]