Definition Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession NC_002678
Length 7,036,071

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The map label for this gene is lpsC [H]

Identifier: 13472306

GI number: 13472306

Start: 2070986

End: 2071780

Strand: Direct

Name: lpsC [H]

Synonym: mlr2557

Alternate gene names: 13472306

Gene position: 2070986-2071780 (Clockwise)

Preceding gene: 13472305

Following gene: 13472311

Centisome position: 29.43

GC content: 61.64

Gene sequence:

>795_bases
ATGACTCGATTTGCAAGCCCGGTCTCGGCGCTTATCATCTGCGTGAACGAGGCCGATATGATCGGCCCGTGCCTGGAAAG
CATCGACTTCTGCGCCGAGATCATCATCGTCGATTCCGGTTCGACGGATGGCACGATCGAATGCGTGAAAAGCTACATCG
CCAAGGGCTACCCGATAAGGCTCTTGCACAATGACTGGCCGGGGTTTCCCCGTCAGCGGCAATTCTCGCTCGACCACGCA
ACCCAGCCCTGGTGCCTCTCGATCGACCCGGACGAGCGCGTCGACGACCAGTTGCGGCAGTCGATCGTGGCCATCACGCA
GGCCGCCGACGACAAGATCAGCGGCTGGTACATCCGCCGCCGCGATTGGCTGAAAGGCTACGGCTATGCGCACCGCTGGG
TGCTGCACAACAGGCTGATGCGGCTTTTCCGCCGGGAAGGTGCCACCATCGATCTCACCGCGCGGGTGCACGAAGCCTTC
CAGGTGCCGGGCGAGACCGGTACGGTCGAAGACGGTGTGCTGCTGCATCGTCGTGAAATATCGGTCGAGGAGGATCTTGC
CCGGGCCAACGCCTATTCCAGCCTCAAGGCCGTCACGCTGGTCGAGAAGGGCAAGAAGCCCGGCCTGGTGCGGCTGGTGC
TGTCGCCGTTGGGCAACTTCCTGAAATTCTACCTGGCCAAGCGCTATTTCCTGTGCGGCCGGCACGGCTTCGTCTACTCG
ATGTCGGTGATGATCTATTCCTTCGCCACGGAGGCAAAGCTCTACGAAGCCTCGGAACGCGACGATCCCGTGTGA

Upstream 100 bases:

>100_bases
ATCCGGGAAAAGTGTGTAACGGTTTTCCGCGCGGGATTGCTTGGGTACAGATGGCGAAAGCAGCGTTGCTCTGGGGGCGG
CCCGCCATGGGAAGGGGACC

Downstream 100 bases:

>100_bases
GCGGTCGGGCCTGGATCAGGACCTGTTGTCCCGGCCGAGCGTTTCAATGGCTGCGAGCAGGTCACCGAGCTCGCTGCTGT
CCCGCAGGGGCCTGATGGCG

Product: glucosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHA
TQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAF
QVPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS
MSVMIYSFATEAKLYEASERDDPV

Sequences:

>Translated_264_residues
MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHA
TQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAF
QVPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS
MSVMIYSFATEAKLYEASERDDPV
>Mature_263_residues
TRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIRLLHNDWPGFPRQRQFSLDHAT
QPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRRRDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQ
VPGETGTVEDGVLLHRREISVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYSM
SVMIYSFATEAKLYEASERDDPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 30009; Mature: 29878

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIR
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEE
LLHNDWPGFPRQRQFSLDHATQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRR
EEECCCCCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEH
RDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQVPGETGTVEDGVLLHRREI
HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCEEEEEHHC
SVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MSVMIYSFATEAKLYEASERDDPV
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRFASPVSALIICVNEADMIGPCLESIDFCAEIIIVDSGSTDGTIECVKSYIAKGYPIR
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEE
LLHNDWPGFPRQRQFSLDHATQPWCLSIDPDERVDDQLRQSIVAITQAADDKISGWYIRR
EEECCCCCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEH
RDWLKGYGYAHRWVLHNRLMRLFRREGATIDLTARVHEAFQVPGETGTVEDGVLLHRREI
HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCEEEEEHHC
SVEEDLARANAYSSLKAVTLVEKGKKPGLVRLVLSPLGNFLKFYLAKRYFLCGRHGFVYS
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MSVMIYSFATEAKLYEASERDDPV
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]