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The map label for this gene is yciR [C]

Identifier: 13472300

GI number: 13472300

Start: 2062854

End: 2064410

Strand: Direct

Name: yciR [C]

Synonym: mlr2546

Alternate gene names: 13472300

Gene position: 2062854-2064410 (Clockwise)

Preceding gene: 13472298

Following gene: 13472301

Centisome position: 29.32

GC content: 64.61

Gene sequence:

>1557_bases
GTGAGCCTGCATTGCGAGGGCCGTCGGATGAGCATACTGGCGACGATCAAGGACCATAGCGGCCGGATCTATCGCGGCAT
CCAGGCCCTGCTTGTGCTGAGCATCGGCGCGGCCGCACTCGGCGCTTTCGACATCTCGCGCAGCCTGCCCTCAGGCGGCG
CCCTGGCCGTCTCGATCCTGGCCACCGGCCTTGCCTTGCTGGCACTGATGTACATGCGCAGCAGCGTCGTCCATCGCTTG
CGCTCGGCGGAAGCGGCGGAAGCAGAAAAACATCATTTCCTGACCAGGGACGCCATGACCGGGGCGATGACCAGGCGCTA
CTTCCTCGAAGCCCTGCGCGACAGCCTGGGCACCATGCGCGACCGGCGCGAGGCGACTTTGCTGTTGATCGATGTCGATC
ACTTCAAGCAGCTCAACGACACGTTCGGCCACCAGTTCGGCGACCTCGCCCTGGTGCACCTGGTCAAGACGTCGGAACGC
GTCTTTGCCGACGGCATGGTCGGGCGGCTGGGCGGCGACGAATTCGGTGTCATCATTCCGCATGGTGACCTCGCCGCCAT
CAACAAGGACATCAGGCAATTGCTCGATACGATGCGGGCCGGCAAATCGCATGAAGGCAAGACCATTCCGCTCTCCATCT
CGGTCGGCGTGGCGCTGGCGCCGGCTCATGCCTCCAACACGGCGGAACTGATGCTGGTTGCCGACCTGGCGCTCTATGAA
AGCAAGGCGGCCGGCCGTGGCCGTGTCACCGTATTCGATGAGGAGATGCTGTCCGACAAGCGCTACCGGCGCCTGGTCGA
ACGGGAGTTGCGCGCAGCGGTCTATCTGGGCGAGCTCGAACTGCACTACCAGCCGATCGTCAATCCGGACGGGTCCGCCT
ATGCTCTCGAAGGCCTGATCCGCTGGCGTCATCCGGTTCGCGGGCTGATCTCGCCGGCCGAGTTCATCCCCATCGCCGAA
CGCTCGACCCTGATCGACATGCTCGGCGAATGGGTGTTCAAGCGGGCTTGCGCCGATGTCGGCCATTTCCCCGGGCGCCG
CATCTCCATCAATGTTTCGGGCGAGCAGCTGAAGCGCGACGAGATCGTCACCATGTGCGACCGCGTGCTGAGGGAAACCG
GTCGCTCGGCGACGCAGTTCATCATCGAGATCACCGAGACCGTGGCGACCGCCGCCACGCCCGAAACCCTGCGGCGCCTC
GAAGCATTGCGCGGCCTCGGCTTCCACATCGCGCTCGACGATTTCGGCACCGGCCATTGCGGCTTCAACTATCTGAAAAC
CCTGCCCATCGACAGCATCAAGATCGACCGATCCTACATCCGCAGCCTCGCCCATGATCAGGTGGCGCAGATCTTCGTTT
CGGCGCTGGCGCAGATCGCGCGCATCCAGGACGTCACCATCGTGGCGGAAGGCGTGGAGACGCAGGAAGAGTTCGCGCTG
GCCAGGGCCGCCGGCTGCAACCGTTTCCAGGGCTACTTCTTCGGCAGGCCGGCGCCGCGCGACAAGGTGGCGCCCTTGCG
CTCCATCGATGCCGAACCCTTGGCCCAGAGCGCCTGA

Upstream 100 bases:

>100_bases
AGACGCGGTTTTCTCTCCTTAACCATGAACCTTTCGCGCATCACAGTACGGGGCGAAACAACGGCGAATTCAATGTCTTC
TTAACGGCTCGCCACTAGCC

Downstream 100 bases:

>100_bases
GACCACCACCGCACGGCAGCGGATTTCTATTTTCCTTGCCCTGCCGGCAAACAAGTGGGACGATGCTTCAGGGCAGGTGG
CAACAGGAAAAGAACCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MSLHCEGRRMSILATIKDHSGRIYRGIQALLVLSIGAAALGAFDISRSLPSGGALAVSILATGLALLALMYMRSSVVHRL
RSAEAAEAEKHHFLTRDAMTGAMTRRYFLEALRDSLGTMRDRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVKTSER
VFADGMVGRLGGDEFGVIIPHGDLAAINKDIRQLLDTMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYE
SKAAGRGRVTVFDEEMLSDKRYRRLVERELRAAVYLGELELHYQPIVNPDGSAYALEGLIRWRHPVRGLISPAEFIPIAE
RSTLIDMLGEWVFKRACADVGHFPGRRISINVSGEQLKRDEIVTMCDRVLRETGRSATQFIIEITETVATAATPETLRRL
EALRGLGFHIALDDFGTGHCGFNYLKTLPIDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFAL
ARAAGCNRFQGYFFGRPAPRDKVAPLRSIDAEPLAQSA

Sequences:

>Translated_518_residues
MSLHCEGRRMSILATIKDHSGRIYRGIQALLVLSIGAAALGAFDISRSLPSGGALAVSILATGLALLALMYMRSSVVHRL
RSAEAAEAEKHHFLTRDAMTGAMTRRYFLEALRDSLGTMRDRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVKTSER
VFADGMVGRLGGDEFGVIIPHGDLAAINKDIRQLLDTMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYE
SKAAGRGRVTVFDEEMLSDKRYRRLVERELRAAVYLGELELHYQPIVNPDGSAYALEGLIRWRHPVRGLISPAEFIPIAE
RSTLIDMLGEWVFKRACADVGHFPGRRISINVSGEQLKRDEIVTMCDRVLRETGRSATQFIIEITETVATAATPETLRRL
EALRGLGFHIALDDFGTGHCGFNYLKTLPIDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFAL
ARAAGCNRFQGYFFGRPAPRDKVAPLRSIDAEPLAQSA
>Mature_517_residues
SLHCEGRRMSILATIKDHSGRIYRGIQALLVLSIGAAALGAFDISRSLPSGGALAVSILATGLALLALMYMRSSVVHRLR
SAEAAEAEKHHFLTRDAMTGAMTRRYFLEALRDSLGTMRDRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVKTSERV
FADGMVGRLGGDEFGVIIPHGDLAAINKDIRQLLDTMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYES
KAAGRGRVTVFDEEMLSDKRYRRLVERELRAAVYLGELELHYQPIVNPDGSAYALEGLIRWRHPVRGLISPAEFIPIAER
STLIDMLGEWVFKRACADVGHFPGRRISINVSGEQLKRDEIVTMCDRVLRETGRSATQFIIEITETVATAATPETLRRLE
ALRGLGFHIALDDFGTGHCGFNYLKTLPIDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFALA
RAAGCNRFQGYFFGRPAPRDKVAPLRSIDAEPLAQSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=409, Percent_Identity=33.2518337408313, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=29.3577981651376, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=32.421875, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=36.5546218487395, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87082096, Length=423, Percent_Identity=25.531914893617, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787055, Length=255, Percent_Identity=32.9411764705882, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=31.6666666666667, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=29.045643153527, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=32.2314049586777, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1788849, Length=317, Percent_Identity=27.1293375394322, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=40.7407407407407, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=28.9915966386555, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI226510982, Length=402, Percent_Identity=26.6169154228856, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=30.4597701149425, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=37.5796178343949, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789650, Length=431, Percent_Identity=21.5777262180974, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=34.0659340659341, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87082007, Length=138, Percent_Identity=39.1304347826087, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=192, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=29.2207792207792, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 56991; Mature: 56860

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLHCEGRRMSILATIKDHSGRIYRGIQALLVLSIGAAALGAFDISRSLPSGGALAVSIL
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATGLALLALMYMRSSVVHRLRSAEAAEAEKHHFLTRDAMTGAMTRRYFLEALRDSLGTMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVKTSERVFADGMVGRLGGDEFGVIIP
CCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEC
HGDLAAINKDIRQLLDTMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYE
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEECCCCCCCHHEEEEHHHHHHH
SKAAGRGRVTVFDEEMLSDKRYRRLVERELRAAVYLGELELHYQPIVNPDGSAYALEGLI
CCCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCHHHHHHHH
RWRHPVRGLISPAEFIPIAERSTLIDMLGEWVFKRACADVGHFPGRRISINVSGEQLKRD
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHH
EIVTMCDRVLRETGRSATQFIIEITETVATAATPETLRRLEALRGLGFHIALDDFGTGHC
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
GFNYLKTLPIDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFAL
CCHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHH
ARAAGCNRFQGYFFGRPAPRDKVAPLRSIDAEPLAQSA
HHHHCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
SLHCEGRRMSILATIKDHSGRIYRGIQALLVLSIGAAALGAFDISRSLPSGGALAVSIL
CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATGLALLALMYMRSSVVHRLRSAEAAEAEKHHFLTRDAMTGAMTRRYFLEALRDSLGTMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVKTSERVFADGMVGRLGGDEFGVIIP
CCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEC
HGDLAAINKDIRQLLDTMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYE
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEECCCCCCCHHEEEEHHHHHHH
SKAAGRGRVTVFDEEMLSDKRYRRLVERELRAAVYLGELELHYQPIVNPDGSAYALEGLI
CCCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCHHHHHHHH
RWRHPVRGLISPAEFIPIAERSTLIDMLGEWVFKRACADVGHFPGRRISINVSGEQLKRD
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHH
EIVTMCDRVLRETGRSATQFIIEITETVATAATPETLRRLEALRGLGFHIALDDFGTGHC
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
GFNYLKTLPIDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFAL
CCHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHH
ARAAGCNRFQGYFFGRPAPRDKVAPLRSIDAEPLAQSA
HHHHCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]