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The map label for this gene is cspA [C]

Identifier: 13472286

GI number: 13472286

Start: 2052407

End: 2052619

Strand: Direct

Name: cspA [C]

Synonym: msr2529

Alternate gene names: 13472286

Gene position: 2052407-2052619 (Clockwise)

Preceding gene: 13472284

Following gene: 13472288

Centisome position: 29.17

GC content: 62.44

Gene sequence:

>213_bases
ATGGCAACTGGAACGGTCAAGTGGTTCAACGCCACCAAGGGCTTCGGCTTCATCCAGCCTGACGCGGGCGGCGCGGACGT
TTTCGTCCACATCTCCGCTGTCGAGCGCGCTGGACTGTCGACCCTGGTCGAAGGCCAGAAGATCAACTTCGAGATCGAGC
AGGACCGCCGCACTGGCAAGTCGTCCGCTGGGTCTCTGAGCAAGGCAGCCTGA

Upstream 100 bases:

>100_bases
TCGCGATCTTCGCGTTTGCTGACGTCTATCTCCAAAATCTCGATGCACACCGGCTGGACTTCGGTCCGGTCAAACCAAAG
CAAATGCAAGGACTATTTTT

Downstream 100 bases:

>100_bases
TTTTGCGAATGGCGCGCGCCGGGCGAGAGCCCGGGGCGTGCGGCAAGTCACGGATGTACTGACGGTCGCGCGAGAAGCGC
GCCCGGAGCGGAAAGACCCG

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGKSSAGSLSKAA

Sequences:

>Translated_70_residues
MATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGKSSAGSLSKAA
>Mature_69_residues
ATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGKSSAGSLSKAA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=51, Percent_Identity=64.7058823529412, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=60, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1786841, Length=49, Percent_Identity=61.2244897959184, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787839, Length=51, Percent_Identity=62.7450980392157, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1788126, Length=59, Percent_Identity=55.9322033898305, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787834, Length=52, Percent_Identity=55.7692307692308, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7358; Mature: 7227

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGK
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCC
SSAGSLSKAA
CCCCCCCCCC
>Mature Secondary Structure 
ATGTVKWFNATKGFGFIQPDAGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGK
CCCCEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCC
SSAGSLSKAA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]