Click here to switch to the map view.

The map label for this gene is ydhP [H]

Identifier: 13472242

GI number: 13472242

Start: 2007335

End: 2008519

Strand: Direct

Name: ydhP [H]

Synonym: mlr2471

Alternate gene names: 13472242

Gene position: 2007335-2008519 (Clockwise)

Preceding gene: 13472241

Following gene: 13472244

Centisome position: 28.53

GC content: 67.93

Gene sequence:

>1185_bases
ATGTCGCTTCCGCTCATTGCCCTGTTCATCGCCGCTTTCGCTTTCGGCACCACCGAATTCGTCATTGCTGGCGTGCTGCC
GCAGGTGGCGGAGGGGCTTGGCGTTTCGGTTCCCTCCGCCGGCTATCTCGTCTCCGGCTATGCCTGCGGCATCGCCATCG
GCGGCCCGCTGCTGGCGCTGGTCACCAAATCCCTGCCGCGCAAGACCTTGCTGCTCGGCCTCGCCATCGCCTTCACCATC
GGCCAGGCAGCCTGTGCGCTGGCGCCCGACTTTACCTCGATGCTGCTGCTGCGCATTGCCGTTGCCGTCGCGCACGGCGC
CTATTTCGGCGTCGCCATGGTGGTCGCCGTCGGCCTCGTTCCCGAGGACAAGCGCGGCATGGCGGTCGCCGTCATCCTGT
CCGGCCTCACCGTCTCCAATGTCATCGGCGTGCCGGCGGGCACCGCCATCGGCAATATCTGGGGCTGGCGCGCAACCTTC
TGGGTGATGTGTGCGCTGGGCGTGGCGGCGACTTGCGCCATGGCGGCCCTTCTGCCGCGCACCGCCGGATATCAGGCCGA
GCCCGCCGGCCTGGCGCGTGAGGTCCGCGTGCTGGCGCGCCAGCAGGTCTGGACCTCGCTGATCCTGATGCTCATGCTGA
TGCTCGGCCAGTTCTGCCTGTTCACCTACATCACGCCGACCTTGCTTGAGGTCACCGGGCTCGACGAAGGCCTGGTGCCC
TGGGTGCTGCTGCTCAACGGCGTCGGCGCCACACTTGGCGTCTTCCTCGGCGGCAAGCTGTCGGACTGGAAGCTGATGCC
GTCGCTCATCACCATGCTGGCCCTGCAGGCGGTGACGCTGGCGGTCATCTATGCCGTCAGCCCCTACCCCGTGCCGATGA
TCGTGGCGATCGTCGTCTGGGGTGGCCTCAACTTCGCCATCGGCACGCCGATCCAGACCCGCATCCTGGCCTGGACGGCG
GATGCCTCCAATCTTGCCTCATCACTGATTCCGTCCGGCTTCAATGTCGGCATCGCGCTGGCCGCGTCGCTGGGCGCCGC
CATGCTCAATGCCGGCTACGGCTACCGCAGCCTGCCTGTGGTGGGCGCGGCCGCCATGCTGGTCGCCGTGGTGGTGGCAG
TCGTCTCCCAGGTCTGGGAAGGGCGCAGCAACGCCACGCCGCCGCTGACGGCCCCGGCGGAGTAA

Upstream 100 bases:

>100_bases
GCTCACCCTCACTCAAGAAAAGCTAAAGTCGCGACAAAAATTTCTGGATTGCCCGCGCCGCCCATCCGTGGTTTGAGGCC
GTTGCAGCCAAGGCATTCCC

Downstream 100 bases:

>100_bases
CGGCCTCACCCCTTCGTCTCCTTCAGCACGTCGATGAAGGCGCGCAGCGCCGGTGGCACCAGCCGGTGGCCTGGATAGTA
GAGGAACAGGCCGGGAATGG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSLPLIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLALVTKSLPRKTLLLGLAIAFTI
GQAACALAPDFTSMLLLRIAVAVAHGAYFGVAMVVAVGLVPEDKRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATF
WVMCALGVAATCAMAALLPRTAGYQAEPAGLAREVRVLARQQVWTSLILMLMLMLGQFCLFTYITPTLLEVTGLDEGLVP
WVLLLNGVGATLGVFLGGKLSDWKLMPSLITMLALQAVTLAVIYAVSPYPVPMIVAIVVWGGLNFAIGTPIQTRILAWTA
DASNLASSLIPSGFNVGIALAASLGAAMLNAGYGYRSLPVVGAAAMLVAVVVAVVSQVWEGRSNATPPLTAPAE

Sequences:

>Translated_394_residues
MSLPLIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLALVTKSLPRKTLLLGLAIAFTI
GQAACALAPDFTSMLLLRIAVAVAHGAYFGVAMVVAVGLVPEDKRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATF
WVMCALGVAATCAMAALLPRTAGYQAEPAGLAREVRVLARQQVWTSLILMLMLMLGQFCLFTYITPTLLEVTGLDEGLVP
WVLLLNGVGATLGVFLGGKLSDWKLMPSLITMLALQAVTLAVIYAVSPYPVPMIVAIVVWGGLNFAIGTPIQTRILAWTA
DASNLASSLIPSGFNVGIALAASLGAAMLNAGYGYRSLPVVGAAAMLVAVVVAVVSQVWEGRSNATPPLTAPAE
>Mature_393_residues
SLPLIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLALVTKSLPRKTLLLGLAIAFTIG
QAACALAPDFTSMLLLRIAVAVAHGAYFGVAMVVAVGLVPEDKRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATFW
VMCALGVAATCAMAALLPRTAGYQAEPAGLAREVRVLARQQVWTSLILMLMLMLGQFCLFTYITPTLLEVTGLDEGLVPW
VLLLNGVGATLGVFLGGKLSDWKLMPSLITMLALQAVTLAVIYAVSPYPVPMIVAIVVWGGLNFAIGTPIQTRILAWTAD
ASNLASSLIPSGFNVGIALAASLGAAMLNAGYGYRSLPVVGAAAMLVAVVVAVVSQVWEGRSNATPPLTAPAE

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=363, Percent_Identity=39.1184573002755, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1786595, Length=364, Percent_Identity=29.1208791208791, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787808, Length=344, Percent_Identity=28.1976744186047, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI145693198, Length=265, Percent_Identity=27.1698113207547, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40463; Mature: 40332

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLAL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHCHHHHHH
VTKSLPRKTLLLGLAIAFTIGQAACALAPDFTSMLLLRIAVAVAHGAYFGVAMVVAVGLV
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PEDKRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATFWVMCALGVAATCAMAALLPR
CCCCCCCEEEHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGYQAEPAGLAREVRVLARQQVWTSLILMLMLMLGQFCLFTYITPTLLEVTGLDEGLVP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
WVLLLNGVGATLGVFLGGKLSDWKLMPSLITMLALQAVTLAVIYAVSPYPVPMIVAIVVW
HHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
GGLNFAIGTPIQTRILAWTADASNLASSLIPSGFNVGIALAASLGAAMLNAGYGYRSLPV
CCCCEEECCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
VGAAAMLVAVVVAVVSQVWEGRSNATPPLTAPAE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLPLIALFIAAFAFGTTEFVIAGVLPQVAEGLGVSVPSAGYLVSGYACGIAIGGPLLAL
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHCHHHHHH
VTKSLPRKTLLLGLAIAFTIGQAACALAPDFTSMLLLRIAVAVAHGAYFGVAMVVAVGLV
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PEDKRGMAVAVILSGLTVSNVIGVPAGTAIGNIWGWRATFWVMCALGVAATCAMAALLPR
CCCCCCCEEEHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGYQAEPAGLAREVRVLARQQVWTSLILMLMLMLGQFCLFTYITPTLLEVTGLDEGLVP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
WVLLLNGVGATLGVFLGGKLSDWKLMPSLITMLALQAVTLAVIYAVSPYPVPMIVAIVVW
HHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
GGLNFAIGTPIQTRILAWTADASNLASSLIPSGFNVGIALAASLGAAMLNAGYGYRSLPV
CCCCEEECCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
VGAAAMLVAVVVAVVSQVWEGRSNATPPLTAPAE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]