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The map label for this gene is degS [C]

Identifier: 13471926

GI number: 13471926

Start: 1681662

End: 1682567

Strand: Reverse

Name: degS [C]

Synonym: mll2051

Alternate gene names: 13471926

Gene position: 1682567-1681662 (Counterclockwise)

Preceding gene: 13471928

Following gene: 13471925

Centisome position: 23.91

GC content: 69.09

Gene sequence:

>906_bases
ATGGCCATCAATCCCAATCCGCGCTCCGTCGTTGCCGTGCGCGCGACCGTTCCCGAGGATGCCTTCACGGCCGGCGCGCT
GGGTACGCTCAGGGAGGGCAGCGGCGTCGTCATTCGCAATGACGGGCTGGTGCTGACCATCGGCTATCTCATCACCGAGG
CCGAGGAGGTCTGGCTGACCGCGTATGACGGCCGCGTCATCCCGGCGCACGCGCTGGCCTATGACCAGGAATCCGGTTTC
GGCCTGGTCCAGGCGCTGGCGCCGACCGGCCTGCCGGCCGTGGCGCTTGGCGATGCCGGCAAGGCCAGGATCGGCGACGC
GGTGGTGCTTGCCGACGGCATCGGCCGGGCGGTCGAAGCCAAGATCGTCACCAAGCAGGAATTCGCCGGCTATTGGGAGT
ATCTGCTCGACGAGGCGATCTTCATCGCGCCGGCGCATCCGTCCTGGGGCGGTGCGCCGCTGTTCGGTGCCGATGGCGCG
CTGCTCGGCATCGGTTCGCTGCGCCTGCAGATGAGCCGCGCCGGCGAGGTCGCCGATATCAACATGGTGGTGCCGATCGA
CCTGTTGCCGCCGATCCTCGACGATCTCTTGACGCGCGGCCAGGTGGCCAAGCCGCCGCGTCCGTGGCTCGGCGCCCTGT
CGGCCGAAAGCGACGGCAAGGTGGTGGTGATGAGCGTGACCGAGGGCGGCCCGGCGGCAAAAGCCGGCCTGCGCCAGGGC
GACGTCATCTCCGAGGTCCGCGACGGCGCGGTCGACGGTCTCGCCGATTTCTATCGCAAGCTGTGGGACAGCGGCTCGGC
CGGCGCCGAGATCCCGATGCGCGTGGTGCGCGACGGCCGCGAGACCTGGCTGCGCGTCAAATCCGCCGATCGCGGCAGTT
TTCTGAAGAAGCCGCAGCTGCAATAG

Upstream 100 bases:

>100_bases
AGGGGGAGAAGGAAGAACTAGCGATGCGCACCTTGCACCATCCCCTCCGAGGCATACCTATAGAAGAAGCCGCCAAGCAT
TTGCATCGCAGGACAAAATC

Downstream 100 bases:

>100_bases
GCCTGGTGTCGGCCGCGCGATGCATCCAAGACTGCTCAAGACCTTTCTCGCGGTGGCGCGCAGCCGCAATATCACGCGTG
CCGCCGAGGCGGTGCATCTC

Product: serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAINPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRNDGLVLTIGYLITEAEEVWLTAYDGRVIPAHALAYDQESGF
GLVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEAKIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGA
LLGIGSLRLQMSRAGEVADINMVVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGKVVVMSVTEGGPAAKAGLRQG
DVISEVRDGAVDGLADFYRKLWDSGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQLQ

Sequences:

>Translated_301_residues
MAINPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRNDGLVLTIGYLITEAEEVWLTAYDGRVIPAHALAYDQESGF
GLVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEAKIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGA
LLGIGSLRLQMSRAGEVADINMVVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGKVVVMSVTEGGPAAKAGLRQG
DVISEVRDGAVDGLADFYRKLWDSGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQLQ
>Mature_300_residues
AINPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRNDGLVLTIGYLITEAEEVWLTAYDGRVIPAHALAYDQESGFG
LVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEAKIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGAL
LGIGSLRLQMSRAGEVADINMVVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGKVVVMSVTEGGPAAKAGLRQGD
VISEVRDGAVDGLADFYRKLWDSGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQLQ

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PDZ (DHR) domains [H]

Homologues:

Organism=Escherichia coli, GI1789630, Length=276, Percent_Identity=27.8985507246377, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789629, Length=271, Percent_Identity=25.0922509225092, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786356, Length=273, Percent_Identity=25.2747252747253, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011782
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 31643; Mature: 31511

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRNDGLVLTIGYLITEAEEVWLT
CCCCCCCCEEEEEEEECCCCHHHHCCCCEEECCCEEEEECCCEEEEEEHHHHCCCEEEEE
AYDGRVIPAHALAYDQESGFGLVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEA
EECCEEEEHHHEEECCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEE
KIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGALLGIGSLRLQMSRAGEVADI
EEECHHHHHHHHHHHHCCEEEEEECCCCCCCCCEECCCCCEEECCCEEEEECCCCCEEEE
NMVVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGKVVVMSVTEGGPAAKAGLRQG
EEEEEHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCC
DVISEVRDGAVDGLADFYRKLWDSGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQL
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHEEEEECCCCCCCCCCCCC
Q
C
>Mature Secondary Structure 
AINPNPRSVVAVRATVPEDAFTAGALGTLREGSGVVIRNDGLVLTIGYLITEAEEVWLT
CCCCCCCEEEEEEEECCCCHHHHCCCCEEECCCEEEEECCCEEEEEEHHHHCCCEEEEE
AYDGRVIPAHALAYDQESGFGLVQALAPTGLPAVALGDAGKARIGDAVVLADGIGRAVEA
EECCEEEEHHHEEECCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEE
KIVTKQEFAGYWEYLLDEAIFIAPAHPSWGGAPLFGADGALLGIGSLRLQMSRAGEVADI
EEECHHHHHHHHHHHHCCEEEEEECCCCCCCCCEECCCCCEEECCCEEEEECCCCCEEEE
NMVVPIDLLPPILDDLLTRGQVAKPPRPWLGALSAESDGKVVVMSVTEGGPAAKAGLRQG
EEEEEHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCC
DVISEVRDGAVDGLADFYRKLWDSGSAGAEIPMRVVRDGRETWLRVKSADRGSFLKKPQL
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHEEEEECCCCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]