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The map label for this gene is ywqM [H]

Identifier: 13471925

GI number: 13471925

Start: 1680653

End: 1681642

Strand: Reverse

Name: ywqM [H]

Synonym: mll2048

Alternate gene names: 13471925

Gene position: 1681642-1680653 (Counterclockwise)

Preceding gene: 13471926

Following gene: 13471922

Centisome position: 23.9

GC content: 70.1

Gene sequence:

>990_bases
ATGCATCCAAGACTGCTCAAGACCTTTCTCGCGGTGGCGCGCAGCCGCAATATCACGCGTGCCGCCGAGGCGGTGCATCT
CGCGCAATCGAGTGTCAGCGACCAGATCCAGACCCTCGAGGCCGAACTGGGCGCTGCCCTGTTCACGCGCTCGAAGTCCG
GTCTTGAACTGACGCCGGCAGGACTGGCGCTGATGCCGATCGCAGAAGAGCTGCTGCGGCTCGACGGCGAGGCGCGCGCG
GCGGTGCTGGCGGCTGCCGGACGCACCAGCGGGGCGCTGACCATCGGCGCGCTGGAGACGATCGCCGCGGCCCGGCTGGC
GCCCTGGCTGCCGGGGTTCCAGGCCGGACATCCAGACATCACCGTGCGGATGAAGGTGGCCGACAGCGGCACGCTGCGGC
GCCTGCTGGAGGACGGCGACATCGACGTCGCTTTCTGCTTCGAGCGTCGGGACGGTGCGCGGGGCGCGGCCGACGGACGC
CTGGCCAGGCGCACGATAGGGGCCGAACCGCTGGTGCTGGTCGCTGCTCCCGGGCAAGCCCTCGCGCCGGGTGGCCTGGC
AGACCTTGCCGCGCTGCGCTTCGTGGCGACGGAGCCCGGATGCATCTACCGGCACATGCTCGACACTGCTTTTGCCGAGG
CGGATATGGCTCCGCCCAAACCCGCGGCCGAAGTCGGCAGCATCGGCGCCATTGCCCGGCTGGTGGCGACGGGTGCCGGG
CTCGGCCTCATTCCCCGTCTCGCCGTCAGCGGTGCGCTGGCGCGCGGCGAGCTCGTGGAATTGCCGTGGCCCGGTCGAAT
GCGGCCGGCACCGCTGACGATGGTCTGGCGACGCCGGCGCATCCAGCCGCCGGCGCTCAGGCAATTGCTTGCCGCCGCGC
GCGACACGCTGGCGCCGGAACGGCTCGAGACGGGCTCAGAAGTTGAATCGGCTGACAGCTCCAAGGCATTGTTTCCAAAC
AACTCCCTGGCGAAGACTGTCGCCAGCTAA

Upstream 100 bases:

>100_bases
GTGCGCGACGGCCGCGAGACCTGGCTGCGCGTCAAATCCGCCGATCGCGGCAGTTTTCTGAAGAAGCCGCAGCTGCAATA
GGCCTGGTGTCGGCCGCGCG

Downstream 100 bases:

>100_bases
ACCAGCCGGTGCCCGCCTTCGACATGCAGCGTCGTGCCGGTCGTAAATCCGTTGCCGATGAGGAAGAAAATAGCGTCGGC
GATGTCTTCGGGCTGGCCGA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MHPRLLKTFLAVARSRNITRAAEAVHLAQSSVSDQIQTLEAELGAALFTRSKSGLELTPAGLALMPIAEELLRLDGEARA
AVLAAAGRTSGALTIGALETIAAARLAPWLPGFQAGHPDITVRMKVADSGTLRRLLEDGDIDVAFCFERRDGARGAADGR
LARRTIGAEPLVLVAAPGQALAPGGLADLAALRFVATEPGCIYRHMLDTAFAEADMAPPKPAAEVGSIGAIARLVATGAG
LGLIPRLAVSGALARGELVELPWPGRMRPAPLTMVWRRRRIQPPALRQLLAAARDTLAPERLETGSEVESADSSKALFPN
NSLAKTVAS

Sequences:

>Translated_329_residues
MHPRLLKTFLAVARSRNITRAAEAVHLAQSSVSDQIQTLEAELGAALFTRSKSGLELTPAGLALMPIAEELLRLDGEARA
AVLAAAGRTSGALTIGALETIAAARLAPWLPGFQAGHPDITVRMKVADSGTLRRLLEDGDIDVAFCFERRDGARGAADGR
LARRTIGAEPLVLVAAPGQALAPGGLADLAALRFVATEPGCIYRHMLDTAFAEADMAPPKPAAEVGSIGAIARLVATGAG
LGLIPRLAVSGALARGELVELPWPGRMRPAPLTMVWRRRRIQPPALRQLLAAARDTLAPERLETGSEVESADSSKALFPN
NSLAKTVAS
>Mature_329_residues
MHPRLLKTFLAVARSRNITRAAEAVHLAQSSVSDQIQTLEAELGAALFTRSKSGLELTPAGLALMPIAEELLRLDGEARA
AVLAAAGRTSGALTIGALETIAAARLAPWLPGFQAGHPDITVRMKVADSGTLRRLLEDGDIDVAFCFERRDGARGAADGR
LARRTIGAEPLVLVAAPGQALAPGGLADLAALRFVATEPGCIYRHMLDTAFAEADMAPPKPAAEVGSIGAIARLVATGAG
LGLIPRLAVSGALARGELVELPWPGRMRPAPLTMVWRRRRIQPPALRQLLAAARDTLAPERLETGSEVESADSSKALFPN
NSLAKTVAS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=275, Percent_Identity=30.9090909090909, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=29.2134831460674, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790208, Length=292, Percent_Identity=27.3972602739726, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48994962, Length=151, Percent_Identity=35.7615894039735, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788887, Length=307, Percent_Identity=28.0130293159609, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=29.9295774647887, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=285, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789173, Length=172, Percent_Identity=34.8837209302326, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=28.0528052805281, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=27.5167785234899, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=301, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788296, Length=250, Percent_Identity=28.4, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788626, Length=145, Percent_Identity=32.4137931034483, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=262, Percent_Identity=26.3358778625954, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=25.3378378378378, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34464; Mature: 34464

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPRLLKTFLAVARSRNITRAAEAVHLAQSSVSDQIQTLEAELGAALFTRSKSGLELTPA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
GLALMPIAEELLRLDGEARAAVLAAAGRTSGALTIGALETIAAARLAPWLPGFQAGHPDI
CCHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCE
TVRMKVADSGTLRRLLEDGDIDVAFCFERRDGARGAADGRLARRTIGAEPLVLVAAPGQA
EEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCC
LAPGGLADLAALRFVATEPGCIYRHMLDTAFAEADMAPPKPAAEVGSIGAIARLVATGAG
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
LGLIPRLAVSGALARGELVELPWPGRMRPAPLTMVWRRRRIQPPALRQLLAAARDTLAPE
CHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
RLETGSEVESADSSKALFPNNSLAKTVAS
HHCCCCHHHCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MHPRLLKTFLAVARSRNITRAAEAVHLAQSSVSDQIQTLEAELGAALFTRSKSGLELTPA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
GLALMPIAEELLRLDGEARAAVLAAAGRTSGALTIGALETIAAARLAPWLPGFQAGHPDI
CCHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCE
TVRMKVADSGTLRRLLEDGDIDVAFCFERRDGARGAADGRLARRTIGAEPLVLVAAPGQA
EEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCC
LAPGGLADLAALRFVATEPGCIYRHMLDTAFAEADMAPPKPAAEVGSIGAIARLVATGAG
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
LGLIPRLAVSGALARGELVELPWPGRMRPAPLTMVWRRRRIQPPALRQLLAAARDTLAPE
CHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
RLETGSEVESADSSKALFPNNSLAKTVAS
HHCCCCHHHCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]