BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ygfF [C]

Identifier: 13471869

GI number: 13471869

Start: 1627345

End: 1628121

Strand: Reverse

Name: ygfF [C]

Synonym: mll1981

Alternate gene names: 13471869

Gene position: 1628121-1627345 (Counterclockwise)

Preceding gene: 13471872

Following gene: 13471868

Centisome position: 23.14

GC content: 67.82

Gene sequence:

>777_bases
ATGACAAACCAGCAGACAAGTACGGGCCAGCAGACAAGCACGGGCAATCCAATCAGAACCGCGATCGTGACCGGCGCCTC
CAAGGGCATTGGTGCGGCGATCGCGCAGCGGCTTGCCCGCGACGGTTTGGCCGTCGTCGTCAATTATGCACGGGGCCGCG
CCGAGGCCGACGCGGTCCGCGGCGCGATCGAGGCCGGAGGCGGCAAGGCGATCGCCGTGCAGGCCGACATCGCCGATCCC
ACCGGTATTGCCACCCTTTTCGATGCCGGCGAGAAGGCGTTCGGCGGCGTCGATATCCTTGTCAACAATGCCGGCATCAT
GAAGCTGTCGCCCATCGCCGGGACCGACGACGCCTCCTTCGACGCGCAGATCGCGGTCAATCTCGGCGGCGTGTTCCGGG
GCACGCGCGAGGGCGCGAAACGCCTTCGCGACGGCGGCCGCATCGTCAATTTCTCGAGCAGCGTCGTCGGCCTCTATCAG
CCGGGCTACGGCGTCTACGCCGCCACCAAGGCGGCGGTCGAGGCGATGACGCATATCCTGGCGAAGGAGCTTGGCGCGCG
CCGCGTCACCGTCAATGCGGTGGCGCCCGGGCCGGTCGAGACCGCGCTGTTCATGGACGGCAAGAGCGCGACGCAGATCG
AGGCCATCGGCAAGATGATCCCGCTCGGCCGGCTCGGCCAGCCCGACGACATTGCCGGCGTCGTGTCGTTCCTGGCCGGG
CCGGACAGTGGCTGGGTCAACGGACAGATCATCCGCGCCAATGGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
CTTTGTTCGCAGTTTCCGAATAGTGATGTCAAGGCACGGCTGATTATCCGGCGGCTCGCTGCGTCTATATCCGCGTCACC
AGCAATTCGGAGAGACTTCC

Downstream 100 bases:

>100_bases
GGGAGGCCGAGATGAAACGGACAATCCTGATCACCGGCGCCTCCAGCGGTTTTGGCGCGATGACTGCGCGGGCGCTCGCA
AGAGCCGGCCACACAGTCTT

Product: short chain dehydrogenase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTNQQTSTGQQTSTGNPIRTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVRGAIEAGGGKAIAVQADIADP
TGIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASFDAQIAVNLGGVFRGTREGAKRLRDGGRIVNFSSSVVGLYQ
PGYGVYAATKAAVEAMTHILAKELGARRVTVNAVAPGPVETALFMDGKSATQIEAIGKMIPLGRLGQPDDIAGVVSFLAG
PDSGWVNGQIIRANGGVI

Sequences:

>Translated_258_residues
MTNQQTSTGQQTSTGNPIRTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVRGAIEAGGGKAIAVQADIADP
TGIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASFDAQIAVNLGGVFRGTREGAKRLRDGGRIVNFSSSVVGLYQ
PGYGVYAATKAAVEAMTHILAKELGARRVTVNAVAPGPVETALFMDGKSATQIEAIGKMIPLGRLGQPDDIAGVVSFLAG
PDSGWVNGQIIRANGGVI
>Mature_257_residues
TNQQTSTGQQTSTGNPIRTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVRGAIEAGGGKAIAVQADIADPT
GIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASFDAQIAVNLGGVFRGTREGAKRLRDGGRIVNFSSSVVGLYQP
GYGVYAATKAAVEAMTHILAKELGARRVTVNAVAPGPVETALFMDGKSATQIEAIGKMIPLGRLGQPDDIAGVVSFLAGP
DSGWVNGQIIRANGGVI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=34.297520661157, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=31.0483870967742, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=34.1176470588235, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.8943089430894, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=32.258064516129, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI10190704, Length=243, Percent_Identity=32.0987654320988, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=29.3650793650794, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=28, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=30.672268907563, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4502601, Length=283, Percent_Identity=28.9752650176678, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI4503301, Length=196, Percent_Identity=31.1224489795918, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4557649, Length=194, Percent_Identity=30.4123711340206, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI59889578, Length=205, Percent_Identity=31.219512195122, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4502599, Length=265, Percent_Identity=30.188679245283, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=31.1827956989247, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI31542939, Length=216, Percent_Identity=31.9444444444444, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7657478, Length=202, Percent_Identity=32.6732673267327, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=187, Percent_Identity=28.8770053475936, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=34.5679012345679, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789378, Length=243, Percent_Identity=35.8024691358025, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=35.6846473029046, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=33.1983805668016, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI87082100, Length=243, Percent_Identity=33.7448559670782, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=35.2697095435685, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=32.3886639676113, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=28.4552845528455, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=34.9794238683128, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=29.8387096774194, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=29.1338582677165, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=27.710843373494, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=31.8407960199005, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=29.8342541436464, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=256, Percent_Identity=33.984375, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=36.2903225806452, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=31.1740890688259, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=31.8367346938775, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=32.2314049586777, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=33.4630350194552, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.824427480916, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=31.8897637795276, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=256, Percent_Identity=33.203125, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=256, Percent_Identity=33.984375, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=246, Percent_Identity=30.8943089430894, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=32.4110671936759, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=242, Percent_Identity=33.0578512396694, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.824427480916, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=33.4600760456274, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=31.5175097276265, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.0606060606061, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=254, Percent_Identity=31.496062992126, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=256, Percent_Identity=31.25, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.0836653386454, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=29.5454545454545, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=239, Percent_Identity=30.5439330543933, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.8007662835249, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=31.1023622047244, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=29.1005291005291, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=28.4046692607004, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=27.3809523809524, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=204, Percent_Identity=34.3137254901961, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=191, Percent_Identity=31.413612565445, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=202, Percent_Identity=33.6633663366337, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=32.2751322751323, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=34.8360655737705, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=33.2, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=34.6774193548387, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24643142, Length=239, Percent_Identity=32.2175732217573, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=33.4677419354839, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=34.8178137651822, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.0483870967742, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24663911, Length=252, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=29.8804780876494, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644337, Length=198, Percent_Identity=33.8383838383838, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=28.3464566929134, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648693, Length=203, Percent_Identity=31.5270935960591, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355889, Length=203, Percent_Identity=31.5270935960591, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=29.3650793650794, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281364494, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24656154, Length=228, Percent_Identity=30.7017543859649, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19922628, Length=228, Percent_Identity=30.7017543859649, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648944, Length=235, Percent_Identity=30.2127659574468, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=32.3383084577114, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007238, Length=195, Percent_Identity=29.2307692307692, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=34.5549738219895, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=34.5549738219895, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007232, Length=177, Percent_Identity=32.7683615819209, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571387, Length=251, Percent_Identity=28.6852589641434, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=33.1395348837209, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=28.125, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859837, Length=250, Percent_Identity=32.4, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665243, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331218, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=31.1557788944724, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221331216, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 26144; Mature: 26013

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQQTSTGQQTSTGNPIRTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVR
CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
GAIEAGGGKAIAVQADIADPTGIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASF
HHHCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEECCCEEEECCCCCCCCCCC
DAQIAVNLGGVFRGTREGAKRLRDGGRIVNFSSSVVGLYQPGYGVYAATKAAVEAMTHIL
CEEEEEEECCHHCCCHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHH
AKELGARRVTVNAVAPGPVETALFMDGKSATQIEAIGKMIPLGRLGQPDDIAGVVSFLAG
HHHHCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
PDSGWVNGQIIRANGGVI
CCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
TNQQTSTGQQTSTGNPIRTAIVTGASKGIGAAIAQRLARDGLAVVVNYARGRAEADAVR
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
GAIEAGGGKAIAVQADIADPTGIATLFDAGEKAFGGVDILVNNAGIMKLSPIAGTDDASF
HHHCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEECCCEEEECCCCCCCCCCC
DAQIAVNLGGVFRGTREGAKRLRDGGRIVNFSSSVVGLYQPGYGVYAATKAAVEAMTHIL
CEEEEEEECCHHCCCHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHH
AKELGARRVTVNAVAPGPVETALFMDGKSATQIEAIGKMIPLGRLGQPDDIAGVVSFLAG
HHHHCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
PDSGWVNGQIIRANGGVI
CCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]