BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ydbJ [H]

Identifier: 13471816

GI number: 13471816

Start: 1573191

End: 1573949

Strand: Reverse

Name: ydbJ [H]

Synonym: mll1914

Alternate gene names: 13471816

Gene position: 1573949-1573191 (Counterclockwise)

Preceding gene: 13471817

Following gene: 13471812

Centisome position: 22.37

GC content: 67.19

Gene sequence:

>759_bases
ATGGCTAGCAGCATCGATCCTGCCGAAATCCTCGCGGTTCGCGGGCTCAGTGCAAGCTATGGTGGCCGGGCGGTGGTCAG
CGGCATCGATCTGTCGCTCGAACGGGGCGACGTCCTTGGCCTGCTCGGCGCCAACGGTTCGGGCAAGTCCACCTTGCTCA
GAGCCATCACCGGCCAGATCCGGCCGCTCGGGGGAACCGTGGCGATCGACGGCGCCGACCTTGCCAGGGCACCGGAACGC
GCCAAGTCCGGCTTCGGCCTTGCCGTGGATCCATCCGATCTGCCGGCGGCGCTGAGCGGGCGGCAATATCTCCAACTCGT
CGCCTCGATCCGCGGCTGTGCCGAAGACGACTGGCCTGGCGTCAATGTTGCCGATCGGCTCGGGCTCAATCGCTGGATCG
AACGGCCGATCGCTGAATATTCACTTGGCACGCGGGCCAAGATCGCCATTGCCGCGGCCCTGCTCGGCGCACCACCGCTG
CTGATCCTCGATGAGTCCCTGAACGGCCTCGATCCGCTTGCCGCCTTCGAGGTGAAGTGCATCATCCTGGCCTTGGCTTC
CAGTGGCCGCCATGCCGTCATCATCTCCACCCATGTCGTGGAGTCCGTACCGGGCCTGTGCAACCGCGCCATGCTCCTGG
CCGACGGCCGCATGGCGCGCGCGTGGCACGCAAGGCAATTGGCCGAGGCCGGCCGGATTCCCGGCGCCTTCGAAGCCGAA
GTCATGCGGGCGCTGACGGTCCAGGCGGCCGATGCGTGA

Upstream 100 bases:

>100_bases
TACGCCAGCTACGAGACGCTCGAATATGGGCGCACGGTGCTGATCGGCTTTGCCGGCCTTGTGCTGTTTCTGTGGTACCG
GGCGCAACGGAGATATCGCC

Downstream 100 bases:

>100_bases
GGGAACGTTGCAGCCGTTTCGCGACGGCTGCGGTCAGGCAGGGCTCAAAGCTCCAGGCAGACCTTGCCGAAATGCTTCCG
CGCTGCGTAGTGCGTGAAGG

Product: ATP-binding protein of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MASSIDPAEILAVRGLSASYGGRAVVSGIDLSLERGDVLGLLGANGSGKSTLLRAITGQIRPLGGTVAIDGADLARAPER
AKSGFGLAVDPSDLPAALSGRQYLQLVASIRGCAEDDWPGVNVADRLGLNRWIERPIAEYSLGTRAKIAIAAALLGAPPL
LILDESLNGLDPLAAFEVKCIILALASSGRHAVIISTHVVESVPGLCNRAMLLADGRMARAWHARQLAEAGRIPGAFEAE
VMRALTVQAADA

Sequences:

>Translated_252_residues
MASSIDPAEILAVRGLSASYGGRAVVSGIDLSLERGDVLGLLGANGSGKSTLLRAITGQIRPLGGTVAIDGADLARAPER
AKSGFGLAVDPSDLPAALSGRQYLQLVASIRGCAEDDWPGVNVADRLGLNRWIERPIAEYSLGTRAKIAIAAALLGAPPL
LILDESLNGLDPLAAFEVKCIILALASSGRHAVIISTHVVESVPGLCNRAMLLADGRMARAWHARQLAEAGRIPGAFEAE
VMRALTVQAADA
>Mature_251_residues
ASSIDPAEILAVRGLSASYGGRAVVSGIDLSLERGDVLGLLGANGSGKSTLLRAITGQIRPLGGTVAIDGADLARAPERA
KSGFGLAVDPSDLPAALSGRQYLQLVASIRGCAEDDWPGVNVADRLGLNRWIERPIAEYSLGTRAKIAIAAALLGAPPLL
ILDESLNGLDPLAAFEVKCIILALASSGRHAVIISTHVVESVPGLCNRAMLLADGRMARAWHARQLAEAGRIPGAFEAEV
MRALTVQAADA

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=251, Percent_Identity=32.2709163346614, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI105990541, Length=215, Percent_Identity=28.8372093023256, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI153792144, Length=201, Percent_Identity=25.3731343283582, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI21536376, Length=213, Percent_Identity=28.169014084507, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=30.9090909090909, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=27.0531400966184, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI27477115, Length=193, Percent_Identity=27.979274611399, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI27436953, Length=192, Percent_Identity=27.0833333333333, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI116734710, Length=219, Percent_Identity=27.3972602739726, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27881501, Length=195, Percent_Identity=28.7179487179487, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI30795238, Length=195, Percent_Identity=28.7179487179487, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27262624, Length=193, Percent_Identity=24.8704663212435, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI27262626, Length=193, Percent_Identity=24.8704663212435, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI11967969, Length=188, Percent_Identity=31.3829787234043, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI87081782, Length=216, Percent_Identity=27.7777777777778, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081791, Length=227, Percent_Identity=25.1101321585903, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789593, Length=219, Percent_Identity=31.5068493150685, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=27.8761061946903, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786253, Length=193, Percent_Identity=29.0155440414508, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788897, Length=234, Percent_Identity=28.6324786324786, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=27.5109170305677, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=26.8518518518519, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788506, Length=211, Percent_Identity=29.8578199052133, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790544, Length=230, Percent_Identity=25.6521739130435, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786703, Length=225, Percent_Identity=29.3333333333333, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994883, Length=236, Percent_Identity=27.1186440677966, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=212, Percent_Identity=28.7735849056604, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=165, Percent_Identity=32.1212121212121, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=25.8928571428571, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=223, Percent_Identity=25.1121076233184, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=26.7281105990783, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=28.7449392712551, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787105, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=25.6756756756757, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=26.6968325791855, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=23.7668161434978, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790190, Length=217, Percent_Identity=24.4239631336406, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=27.5720164609054, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787792, Length=221, Percent_Identity=25.7918552036199, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=25.7009345794392, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=224, Percent_Identity=29.4642857142857, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI115533608, Length=216, Percent_Identity=31.0185185185185, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=28.5, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=27.1889400921659, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=27.1889400921659, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=27.1889400921659, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193202349, Length=184, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=28.7037037037037, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=28.7037037037037, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=31.7535545023697, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=26.1467889908257, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221512771, Length=208, Percent_Identity=27.4038461538462, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI116007184, Length=219, Percent_Identity=26.9406392694064, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=31.3364055299539, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28573573, Length=221, Percent_Identity=30.316742081448, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28573571, Length=221, Percent_Identity=30.316742081448, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648314, Length=210, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571209, Length=219, Percent_Identity=22.3744292237443, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26055; Mature: 25924

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSIDPAEILAVRGLSASYGGRAVVSGIDLSLERGDVLGLLGANGSGKSTLLRAITGQI
CCCCCCHHHHHEECCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCCHHHHHHHHHCCC
RPLGGTVAIDGADLARAPERAKSGFGLAVDPSDLPAALSGRQYLQLVASIRGCAEDDWPG
EECCCEEEECCHHHHCCCHHHHCCCCEEECCCCCCHHHCHHHHHHHHHHHHCCCCCCCCC
VNVADRLGLNRWIERPIAEYSLGTRAKIAIAAALLGAPPLLILDESLNGLDPLAAFEVKC
CCHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
IILALASSGRHAVIISTHVVESVPGLCNRAMLLADGRMARAWHARQLAEAGRIPGAFEAE
EEEEEECCCCEEEEEEHHHHHHCCHHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHH
VMRALTVQAADA
HHHHHHHHCCCC
>Mature Secondary Structure 
ASSIDPAEILAVRGLSASYGGRAVVSGIDLSLERGDVLGLLGANGSGKSTLLRAITGQI
CCCCCHHHHHEECCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCCHHHHHHHHHCCC
RPLGGTVAIDGADLARAPERAKSGFGLAVDPSDLPAALSGRQYLQLVASIRGCAEDDWPG
EECCCEEEECCHHHHCCCHHHHCCCCEEECCCCCCHHHCHHHHHHHHHHHHCCCCCCCCC
VNVADRLGLNRWIERPIAEYSLGTRAKIAIAAALLGAPPLLILDESLNGLDPLAAFEVKC
CCHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
IILALASSGRHAVIISTHVVESVPGLCNRAMLLADGRMARAWHARQLAEAGRIPGAFEAE
EEEEEECCCCEEEEEEHHHHHHCCHHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHH
VMRALTVQAADA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]