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The map label for this gene is yciR [C]

Identifier: 13471767

GI number: 13471767

Start: 1526530

End: 1528629

Strand: Reverse

Name: yciR [C]

Synonym: mll1848

Alternate gene names: 13471767

Gene position: 1528629-1526530 (Counterclockwise)

Preceding gene: 13471770

Following gene: 13471766

Centisome position: 21.73

GC content: 67.81

Gene sequence:

>2100_bases
ATGGCGCGTCTAGGCAAGAAAAGTCGCAATGGAGCGTTCTGGGCCAAGGCCCTGGAGCGCGCCCATCTTGGCGTCTGGGA
CTGGGATCTTCGCAGCGGCGACTGCTTCTATTCTGCAACCTGGGCGCGAATGCTGGGCTATGAAGAAGATGAACTCGCTA
ACACCAGTGATCTGTGGCTGCAGCTCACCCATCCCGACGACCGCGAGCGGGCGCTGGCCAGCGGCGACCGCCACATTGCC
GGGCTGACCGATGCCATCGAGACAGAACTGCGGCTGAAGCACAAGCTGGGCCACTGGGTGTGGGTGCTCGACCGCGGCGG
CATCGTCGAAAGCGGCGCCGACGGGCGTCCGCTGCGGCTGATGGGCGTACAGACCGACATTTCAAAGCAGAAGGCGGCCG
AGGCCGCGCTCGAGCAGGTCACGATGCGCTTCCGCCTGGCGCTCGCCGCCAGCGGCACCGGAATCTGGCACTACGACATC
GCCACCCACAAAAGCTATTGGGATGCGCGCACCAGGGAGATGTTCGGCGTCGTCGCCGATGCCGACGAGGTGGCGGCCGA
CCTCTGGCACAGTTTTCTGCATCCCGACGACAAGGAAGCTACCGAGCGGGCGCATTGGCCGTCCCCTGGCTCGAACGGTG
TAACCGCCTCGCAATACCGCATCGTCAAGCGCGACGGCGAGATCCGCCACATCGAATCGCTCGTGCGTTACGTCGCCGCC
GCGGGCGCTGCCGGCCAGATCCTCGGCACGGTTCGCGACATCACCGAGGACAAGTTGCGCGAACAGGAGCTTGCGTTCGC
CGCCCGCCACGACGCGCTGACCGGCCTGTGGAACCGCGCCGCCTTCGACAGGCTGCTTGCCGACCACATCGCCAAGGGCG
TGCCGCTGGCGGTGTTCTATGTCGATCTCGACTACTTCAAGGCGCTCAACGACTTCGCCGGCCACGCCGCCGGCGACCTG
GCGCTGAAGAGCGTGGCGGCGGGCATTGGCCGCTGCCTGCCGCCGTCGGCGCATGCGGCGCGGCTCGGCGGCGACGAATT
CGCTTTGCTGGTGCCCCACTGCGACGCCGCGCAAGCCGAGCGGCTGGCCGCGGCCATACTGGCGGCCGTGCGCAGCGCCG
ATCTCGGCCTTGCCGCGACCGCGCGGCGGCTCGCGGCAAGCATCGGCATCGCCATCGTCAACGACCGGGCCACCACGGTG
GCCGATGCGCTGGCCTGCGCCGACGACGCCTGCTACGCGGCCAAGGCCGCCGGGCGCGATCGCTTCGCGGTGTTTTCGGC
TGAAGCCGCCACCGGCGGCCTCAACGCGGCGCGGCTCGCCGCCGACACGGTCGACGCCATGGAGGACGGAAGGCTGAAAC
TGTTCGGCCAGGAGATCCACCGGCTGGGCCGGCCGTGGCAGGAAAACCGCCATGTCGAAGTGCTGGCGCGGCTTGTCGGT
CGCGGCGGCAAGCTGATCCCGCCCAGCGAATTCATCCCGGCGGCGGAACGCTTCGGCATCGCCGCCAGGCTCGATCGCTG
GATCATCCGAACCGCGCTCTCGCGGCATGGCGCGGCGATGAAGTCCGGCGCGATCACGCTCGGCTTCAACCTGTCGGCGC
AGACGCTGAGCGATCCCGGACTGTGGGACTTCGTCGACAGTATCATCGAGGAGACCGGGGCGCCGCATTCCGGCATCGGC
TTCGAGATCACCGAAACCGCCGCCGTCACCAATTTCGATGCCGCCGAGACGTTCGTGCGCAAGGCGCGCGAGCGGCGCTG
CAAGGTCAGCCTCGACGATTTCGGCGCCGGCATGAGCTCGTTCGAATATCTCAGACGCTTTCCCGTCGATGCCATCAAGA
TCGACGGTTCCTTCATCGAGCACATGGCCGAAAGCCGCTTCGACCGCGAGATCGTCTCGGCCATATCGGGCATTGCCCGC
AGCGTCGGCTGCACCGTCGTGGCCGAGAAGATAGAGCAAGCCGAGACGCTTGGCATCCTGCAGACGATGGGCGTCGATTT
CGGCCAGGGTTTCCTGCTGCACCGGCCCGAGCCGCTGGAGCAGATCGTCGCTCGGGCGGCCGGGCCGGCACGCGCAGCAC
CGGCCCGCAAGGCGTCCTGA

Upstream 100 bases:

>100_bases
ATATTGCAGGCGAGAAGGCATGCCTGCCGCGTCCCGGTAACTGTTTCTTCTCTGGTTCTGATGCAGATTGCCCGCGGATG
GGACAGGCGAAAAACGGACT

Downstream 100 bases:

>100_bases
TGCATGTCCCCCAAAAGTGCGCAGCGGTTTTGGGATAAGGACATGCATCAAGCAGAACGCATGTCCCCCAAAAGTGCGCA
GCGGTTTTGGGATAAGGACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 698

Protein sequence:

>699_residues
MARLGKKSRNGAFWAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWLQLTHPDDRERALASGDRHIA
GLTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRLMGVQTDISKQKAAEAALEQVTMRFRLALAASGTGIWHYDI
ATHKSYWDARTREMFGVVADADEVAADLWHSFLHPDDKEATERAHWPSPGSNGVTASQYRIVKRDGEIRHIESLVRYVAA
AGAAGQILGTVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAKGVPLAVFYVDLDYFKALNDFAGHAAGDL
ALKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAERLAAAILAAVRSADLGLAATARRLAASIGIAIVNDRATTV
ADALACADDACYAAKAAGRDRFAVFSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVG
RGGKLIPPSEFIPAAERFGIAARLDRWIIRTALSRHGAAMKSGAITLGFNLSAQTLSDPGLWDFVDSIIEETGAPHSGIG
FEITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSSFEYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIAR
SVGCTVVAEKIEQAETLGILQTMGVDFGQGFLLHRPEPLEQIVARAAGPARAAPARKAS

Sequences:

>Translated_699_residues
MARLGKKSRNGAFWAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWLQLTHPDDRERALASGDRHIA
GLTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRLMGVQTDISKQKAAEAALEQVTMRFRLALAASGTGIWHYDI
ATHKSYWDARTREMFGVVADADEVAADLWHSFLHPDDKEATERAHWPSPGSNGVTASQYRIVKRDGEIRHIESLVRYVAA
AGAAGQILGTVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAKGVPLAVFYVDLDYFKALNDFAGHAAGDL
ALKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAERLAAAILAAVRSADLGLAATARRLAASIGIAIVNDRATTV
ADALACADDACYAAKAAGRDRFAVFSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVG
RGGKLIPPSEFIPAAERFGIAARLDRWIIRTALSRHGAAMKSGAITLGFNLSAQTLSDPGLWDFVDSIIEETGAPHSGIG
FEITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSSFEYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIAR
SVGCTVVAEKIEQAETLGILQTMGVDFGQGFLLHRPEPLEQIVARAAGPARAAPARKAS
>Mature_698_residues
ARLGKKSRNGAFWAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWLQLTHPDDRERALASGDRHIAG
LTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRLMGVQTDISKQKAAEAALEQVTMRFRLALAASGTGIWHYDIA
THKSYWDARTREMFGVVADADEVAADLWHSFLHPDDKEATERAHWPSPGSNGVTASQYRIVKRDGEIRHIESLVRYVAAA
GAAGQILGTVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAKGVPLAVFYVDLDYFKALNDFAGHAAGDLA
LKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAERLAAAILAAVRSADLGLAATARRLAASIGIAIVNDRATTVA
DALACADDACYAAKAAGRDRFAVFSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVGR
GGKLIPPSEFIPAAERFGIAARLDRWIIRTALSRHGAAMKSGAITLGFNLSAQTLSDPGLWDFVDSIIEETGAPHSGIGF
EITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSSFEYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIARS
VGCTVVAEKIEQAETLGILQTMGVDFGQGFLLHRPEPLEQIVARAAGPARAAPARKAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=32.6388888888889, Blast_Score=208, Evalue=1e-54,
Organism=Escherichia coli, GI1788381, Length=708, Percent_Identity=25.1412429378531, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=28.1395348837209, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1788849, Length=208, Percent_Identity=32.2115384615385, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=28.515625, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI226510982, Length=415, Percent_Identity=23.855421686747, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=202, Percent_Identity=34.1584158415842, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786507, Length=215, Percent_Identity=28.3720930232558, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=28.6290322580645, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87081743, Length=209, Percent_Identity=28.2296650717703, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=33.5403726708075, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=34.2245989304813, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=29.535864978903, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787055, Length=387, Percent_Identity=26.0981912144703, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788502, Length=221, Percent_Identity=27.6018099547511, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=28.448275862069, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=29.0909090909091, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=28.3018867924528, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=34.5029239766082, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 75790; Mature: 75659

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00626 RCC1_2 ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLGKKSRNGAFWAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWL
CCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCEEHHHHHHHHHCCCHHHHCCCCCEEE
QLTHPDDRERALASGDRHIAGLTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRL
EECCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCEEE
MGVQTDISKQKAAEAALEQVTMRFRLALAASGTGIWHYDIATHKSYWDARTREMFGVVAD
EECCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECHHCCHHHHHHHHHHHHHHCC
ADEVAADLWHSFLHPDDKEATERAHWPSPGSNGVTASQYRIVKRDGEIRHIESLVRYVAA
HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHH
AGAAGQILGTVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAKGVPLAVFY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VDLDYFKALNDFAGHAAGDLALKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAE
EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCHHHHH
RLAAAILAAVRSADLGLAATARRLAASIGIAIVNDRATTVADALACADDACYAAKAAGRD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHCCHHHHHHHHCCCC
RFAVFSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVG
CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHEEHHHHHHCCCCCCCCCHHHHHHHHHC
RGGKLIPPSEFIPAAERFGIAARLDRWIIRTALSRHGAAMKSGAITLGFNLSAQTLSDPG
CCCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCHHCCCCCC
LWDFVDSIIEETGAPHSGIGFEITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSS
HHHHHHHHHHHCCCCCCCCCEEEECCHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHH
FEYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIARSVGCTVVAEKIEQAETLGIL
HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTMGVDFGQGFLLHRPEPLEQIVARAAGPARAAPARKAS
HHHCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARLGKKSRNGAFWAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWL
CCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCEEHHHHHHHHHCCCHHHHCCCCCEEE
QLTHPDDRERALASGDRHIAGLTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRL
EECCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCEEE
MGVQTDISKQKAAEAALEQVTMRFRLALAASGTGIWHYDIATHKSYWDARTREMFGVVAD
EECCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECHHCCHHHHHHHHHHHHHHCC
ADEVAADLWHSFLHPDDKEATERAHWPSPGSNGVTASQYRIVKRDGEIRHIESLVRYVAA
HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHH
AGAAGQILGTVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAKGVPLAVFY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VDLDYFKALNDFAGHAAGDLALKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAE
EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCHHHHH
RLAAAILAAVRSADLGLAATARRLAASIGIAIVNDRATTVADALACADDACYAAKAAGRD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHCCHHHHHHHHCCCC
RFAVFSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVG
CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHEEHHHHHHCCCCCCCCCHHHHHHHHHC
RGGKLIPPSEFIPAAERFGIAARLDRWIIRTALSRHGAAMKSGAITLGFNLSAQTLSDPG
CCCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCHHCCCCCC
LWDFVDSIIEETGAPHSGIGFEITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSS
HHHHHHHHHHHCCCCCCCCCEEEECCHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHH
FEYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIARSVGCTVVAEKIEQAETLGIL
HHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTMGVDFGQGFLLHRPEPLEQIVARAAGPARAAPARKAS
HHHCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]