Click here to switch to the map view.

The map label for this gene is ykoF [H]

Identifier: 13471706

GI number: 13471706

Start: 1468318

End: 1469196

Strand: Reverse

Name: ykoF [H]

Synonym: mll1759

Alternate gene names: 13471706

Gene position: 1469196-1468318 (Counterclockwise)

Preceding gene: 13471707

Following gene: 13471705

Centisome position: 20.88

GC content: 63.59

Gene sequence:

>879_bases
GTGTCCGGCGGCTTTTCTTTTTTGGGCAATCACTCGCAGTTGTTGCTGTTCGCGGTGGGCGCCGTGGCGTCGCCGTTGGC
ATCGGTTTGCGACCCCTGGTGCAATGCTTTTGGCCCGGTGCGCTTAAAAAACGGCTTCCCCTTCCATTCGAATGGTGCTT
TAACGCGCCCATCCACAGGGGTGCTCCGTACGGTCGGGGCTGAGACGGGGGCGGCAAGCCCACAGACCCTAGAAGCTGAT
CTGGGTAATACCAGCGGAGCGAGGCGGGCGATGTTTTCAGGCGCACAGATTTCCCTATATCCCATGGCCGACGATTTCGT
CGGCGTCATCCTGGGCGCGCTCAGCGCGCTCGATCCCTACCGGGACAGGCTCCGGATCGAGACCGATGACATCTCGACCT
TGCTGGTCGGGCCGCCCGAAGTGTTGTTCCCGGCGCTGCGCGACCTGTTCGTAGCGGCGGCGCAGAGCGGCAAGCATTGC
GTGCTGTCGGCCGCCATTTCGCGGGGCTGCCCGGGCGAGCCGGACGATCCGATCTGCCGCTCCGATGCGTTTGGCGGTCC
TGTCGGACCGCTCGGCCCACGAAAGCAAGCCGCCATCACCGCCGTGCGTAATGCTGCTGCCACCGGTCAGCCGGCGGCGG
CGCAATTCTCGCTCTATGTGATGGGCATCGGCGACCACATGGACGAGATCTACGGCTGCATCGATTTCCTCAAGCAGTCC
GGCGTCTACGATCGCTCCAAGAATTTTTGCACCAAACTGCGCGGTGATACCGGCGCAATCTTTTCGGCGCTGAACGAAGC
CTTCTGCCGCTTCGGGCCGGGCGCCGGCCACGTAACCCTCGACGTCACGGTTTCCGCCAACAGCCCGTCGGCTGTCTAG

Upstream 100 bases:

>100_bases
CCATTTCGTCAGGCCGGGCTGGAAGCTGCCGGTACGCGAGAAGGCCGTATCCTAACGGTTGGCATAAAGCATCGTTGGGA
ATGATATCGAAAGCCGCCGG

Downstream 100 bases:

>100_bases
GCCGGCCGCGCTTCCGCGCGTCCCCGTCAAAGGTTATGCCCGTGGTTTCATCTTCAGTCGCGCCGCGCCCGCTCGCGGCT
TCCCTTGCCAAGGCAGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSGGFSFLGNHSQLLLFAVGAVASPLASVCDPWCNAFGPVRLKNGFPFHSNGALTRPSTGVLRTVGAETGAASPQTLEAD
LGNTSGARRAMFSGAQISLYPMADDFVGVILGALSALDPYRDRLRIETDDISTLLVGPPEVLFPALRDLFVAAAQSGKHC
VLSAAISRGCPGEPDDPICRSDAFGGPVGPLGPRKQAAITAVRNAAATGQPAAAQFSLYVMGIGDHMDEIYGCIDFLKQS
GVYDRSKNFCTKLRGDTGAIFSALNEAFCRFGPGAGHVTLDVTVSANSPSAV

Sequences:

>Translated_292_residues
MSGGFSFLGNHSQLLLFAVGAVASPLASVCDPWCNAFGPVRLKNGFPFHSNGALTRPSTGVLRTVGAETGAASPQTLEAD
LGNTSGARRAMFSGAQISLYPMADDFVGVILGALSALDPYRDRLRIETDDISTLLVGPPEVLFPALRDLFVAAAQSGKHC
VLSAAISRGCPGEPDDPICRSDAFGGPVGPLGPRKQAAITAVRNAAATGQPAAAQFSLYVMGIGDHMDEIYGCIDFLKQS
GVYDRSKNFCTKLRGDTGAIFSALNEAFCRFGPGAGHVTLDVTVSANSPSAV
>Mature_291_residues
SGGFSFLGNHSQLLLFAVGAVASPLASVCDPWCNAFGPVRLKNGFPFHSNGALTRPSTGVLRTVGAETGAASPQTLEADL
GNTSGARRAMFSGAQISLYPMADDFVGVILGALSALDPYRDRLRIETDDISTLLVGPPEVLFPALRDLFVAAAQSGKHCV
LSAAISRGCPGEPDDPICRSDAFGGPVGPLGPRKQAAITAVRNAAATGQPAAAQFSLYVMGIGDHMDEIYGCIDFLKQSG
VYDRSKNFCTKLRGDTGAIFSALNEAFCRFGPGAGHVTLDVTVSANSPSAV

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Binds thiamine via its HMP moiety [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015835
- InterPro:   IPR016198
- InterPro:   IPR011522 [H]

Pfam domain/function: PF07615 Ykof [H]

EC number: NA

Molecular weight: Translated: 30299; Mature: 30167

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGFSFLGNHSQLLLFAVGAVASPLASVCDPWCNAFGPVRLKNGFPFHSNGALTRPSTG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
VLRTVGAETGAASPQTLEADLGNTSGARRAMFSGAQISLYPMADDFVGVILGALSALDPY
HHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCHH
RDRLRIETDDISTLLVGPPEVLFPALRDLFVAAAQSGKHCVLSAAISRGCPGEPDDPICR
HHHEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCC
SDAFGGPVGPLGPRKQAAITAVRNAAATGQPAAAQFSLYVMGIGDHMDEIYGCIDFLKQS
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHC
GVYDRSKNFCTKLRGDTGAIFSALNEAFCRFGPGAGHVTLDVTVSANSPSAV
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure 
SGGFSFLGNHSQLLLFAVGAVASPLASVCDPWCNAFGPVRLKNGFPFHSNGALTRPSTG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
VLRTVGAETGAASPQTLEADLGNTSGARRAMFSGAQISLYPMADDFVGVILGALSALDPY
HHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCHH
RDRLRIETDDISTLLVGPPEVLFPALRDLFVAAAQSGKHCVLSAAISRGCPGEPDDPICR
HHHEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCC
SDAFGGPVGPLGPRKQAAITAVRNAAATGQPAAAQFSLYVMGIGDHMDEIYGCIDFLKQS
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHC
GVYDRSKNFCTKLRGDTGAIFSALNEAFCRFGPGAGHVTLDVTVSANSPSAV
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]