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The map label for this gene is ycdC [C]

Identifier: 13471487

GI number: 13471487

Start: 1224752

End: 1225441

Strand: Direct

Name: ycdC [C]

Synonym: mlr1472

Alternate gene names: 13471487

Gene position: 1224752-1225441 (Clockwise)

Preceding gene: 13471485

Following gene: 13471488

Centisome position: 17.41

GC content: 64.64

Gene sequence:

>690_bases
ATGAGAGCGAGCGTTTCTCCTGACATTTTCCCGCCACGCGGCCATGAGGCCAAGCGCCTGTCGATCGTCGACGCCGCCGC
TGGCGTGTTCTGCCGCGAGGGCTTCGCCGGCGCCAATATCGACCTGATCGCCGCGGAGGCCGGCGTCTCGCGCCAGACCG
TCTACAACCACCATGGCGACAAGGAAAAGCTCTTCATGGCCGTGGTGCGCGACCTCACCGATCGCTGCAATGTCGGCATC
TTCGCCACCATTGCCACCTTCCCTGACCAGCCCGGTGATCTCGAAGCGGATTTGATCGGCTTTGCCGTGCGCCTGAACCA
GAACTGCATCTGCAACCGCGACGGAAAATTCCTGCGCAAGCTGATCCAGACCGAAGGCGAGCGCTACCCCGAACTGTTTG
CCGAATGGCGCGAACAGGGTCCGGGCACGACGTTGCCTGCGATCGCCGCCCGCTTCGCCCGCCTCGCCTATGGCGGTTAC
CTGACGATCGACGACCCCGACGTCGCGGCGCGCCAGTTCTTCGGCCTGGTCAACGCCGAACTGCAGACCACCTTCATGCT
CGGCGGCACGCCGCGCGAGGACGAAGTGGTGCGATCGGCGACGAATGGCGTGCGCACCTTCCTGCGCGCTTTCGGCAAGC
GCCCTGCCCCGGGCAGCGTCAAAAAGCACATTGCGCTGGCTAACGCATAA

Upstream 100 bases:

>100_bases
CAGCGAATTCTGATCGTCCCGGGCGCGAAATCTCTTTATCGCATGTCCACAAATTTAGACAGTCTTGTCTAAATCGTCAA
TCACCTCTATATAGATTTTC

Downstream 100 bases:

>100_bases
CATTTGCGGTTGCCGGTAAGCCGCCTTGCCGATCAAATCGTCGGCAATAGTCCTCGCTTCGACGCGACGGTGGGCTATAT
CAGGTTTACGCCGCGCTCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR-Type Transcriptional Regulator; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR/AcrR Family; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRASVSPDIFPPRGHEAKRLSIVDAAAGVFCREGFAGANIDLIAAEAGVSRQTVYNHHGDKEKLFMAVVRDLTDRCNVGI
FATIATFPDQPGDLEADLIGFAVRLNQNCICNRDGKFLRKLIQTEGERYPELFAEWREQGPGTTLPAIAARFARLAYGGY
LTIDDPDVAARQFFGLVNAELQTTFMLGGTPREDEVVRSATNGVRTFLRAFGKRPAPGSVKKHIALANA

Sequences:

>Translated_229_residues
MRASVSPDIFPPRGHEAKRLSIVDAAAGVFCREGFAGANIDLIAAEAGVSRQTVYNHHGDKEKLFMAVVRDLTDRCNVGI
FATIATFPDQPGDLEADLIGFAVRLNQNCICNRDGKFLRKLIQTEGERYPELFAEWREQGPGTTLPAIAARFARLAYGGY
LTIDDPDVAARQFFGLVNAELQTTFMLGGTPREDEVVRSATNGVRTFLRAFGKRPAPGSVKKHIALANA
>Mature_229_residues
MRASVSPDIFPPRGHEAKRLSIVDAAAGVFCREGFAGANIDLIAAEAGVSRQTVYNHHGDKEKLFMAVVRDLTDRCNVGI
FATIATFPDQPGDLEADLIGFAVRLNQNCICNRDGKFLRKLIQTEGERYPELFAEWREQGPGTTLPAIAARFARLAYGGY
LTIDDPDVAARQFFGLVNAELQTTFMLGGTPREDEVVRSATNGVRTFLRAFGKRPAPGSVKKHIALANA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24997; Mature: 24997

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASVSPDIFPPRGHEAKRLSIVDAAAGVFCREGFAGANIDLIAAEAGVSRQTVYNHHGD
CCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC
KEKLFMAVVRDLTDRCNVGIFATIATFPDQPGDLEADLIGFAVRLNQNCICNRDGKFLRK
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHEEEEECCCCEECCCHHHHHH
LIQTEGERYPELFAEWREQGPGTTLPAIAARFARLAYGGYLTIDDPDVAARQFFGLVNAE
HHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCC
LQTTFMLGGTPREDEVVRSATNGVRTFLRAFGKRPAPGSVKKHIALANA
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCC
>Mature Secondary Structure
MRASVSPDIFPPRGHEAKRLSIVDAAAGVFCREGFAGANIDLIAAEAGVSRQTVYNHHGD
CCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCC
KEKLFMAVVRDLTDRCNVGIFATIATFPDQPGDLEADLIGFAVRLNQNCICNRDGKFLRK
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHEEEEECCCCEECCCHHHHHH
LIQTEGERYPELFAEWREQGPGTTLPAIAARFARLAYGGYLTIDDPDVAARQFFGLVNAE
HHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCC
LQTTFMLGGTPREDEVVRSATNGVRTFLRAFGKRPAPGSVKKHIALANA
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA