| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is secD [H]
Identifier: 13471172
GI number: 13471172
Start: 895303
End: 897852
Strand: Reverse
Name: secD [H]
Synonym: mll1070
Alternate gene names: 13471172
Gene position: 897852-895303 (Counterclockwise)
Preceding gene: 13471173
Following gene: 13471171
Centisome position: 12.76
GC content: 62.27
Gene sequence:
>2550_bases ATGCTGTATTTTTCGCGCTTCAAGATGATCCTGATTTGGGTGGCCGTTGCCATCACAGTGATCCTCGCCGCGCCCAATCT GTTCCCTGCCAGCACGCTGGCCCAGCTGCCGAGCTGGGTGCCGAAGCGGCAGATGACGCTCGGCCTCGACCTGCAGGGCG GTTCGCACATCCTGCTGGAGATGAACCAGAACGATCTGATCAAGGATCGGCTGGAGACGACGCGCGACGAAATCCGCACG CTGCTGCGTGATGCCAAGATCGGCTATACCGGCCTTGCCGGCACCGGGCGCACTTTGCAGGTCCGCATCACGGATCCGGC CCAGCTCGACGCTGCGAAAAAGGCGTTGAAGACCTTGACCGATCCTGTTGCCGCTGGCCTATTCTCCGGCGGCTCCATCC AGGAAATGTCGCTGGACGATTCCGAGCCGGGTCTGCTCAAGTTCACCGTCACCGACGCTGGTATCAAATACCGCACATCG ACCGCATTGGCGCAGTCGATCGAAGTGGTCGAGCGCCGCGTCAACGAACTCGGCACCACCGAGCCTATCGTGCAGCGGCA AGGCGATGACCGCATCCTTGTCCAGGTGCCGGGCCTGCAGGATCCGCAGCGGCTGAAGGAAATCCTCGGCCAGACCGCGA AGCTGACCTTCCAGATGGTCGACCAGTCGATGCCGGTGCAGGACGCGCTCAAGGGGCGCCCGCCCGCGGGCTCGTCGGTG CTGTATTCGCAGGACGATCCGCCGGTTCCGTATCTGATCGAAAACCGCGTCATCGTTTCGGGCGAAAACCTCGTCGACGC GCAGGCGACCTACAATTCGCAGAACAACGAGCCGGTGGTTTCATTCCGCTTCGATTCGAAGGGCGCCGCCCGCTTCGGCC AGGCGACCTCGCAGAATGTTGGCAAGCTGTTCGCCATCATCCTCGACAACCAGGTGATCTCGGCGCCGCAGATCCGTGAA CCGATCCTCGGCGGCACCGGCCAGATCTCAGGCAATTTCACCGCCCAGAGCGCCAATGATCTGGCCGTGCTTTTGCGAGC CGGTGCGCTGCCGGCGACGCTGACGGTGATCGAGGAACGCACTGTCGGTCCGGGCCTTGGCCAGGATTCGATTCATGCCG GCAAGGTGGCCGGCATCATCGGTTCGATCCTCGTCGTTGCCTTCATGTTCGTCGCCTACGGCTTCCTCGGTTTCCTCGCC AACATCGCGCTGGCGGTGCACGTGGCGATGATCGTCGGCCTGTTGTCGCTGCTTGGGGCGACGCTGACCTTGCCCGGTAT TGCCGGTATCGTGCTGACCATCGGCATGGCGGTCGATTCCAACGTGCTGATCTACGAACGCATCCGTGAAGAACGACGGG CTGGCCGCTCGGTGATCCAGGCGATCGACACCGGCTTCTCGAAGGCGCTGGCGACCATCGTCGATTCCAACGTTACGTCG CTGATCGCCACCGTGGTGCTGTTCTATCTCGGCACCGGCCCGGTGAAGGGCTTTGCCATCACCTACGCCATCGGTATCCT GACCACGGTGTTCACCGCTTTCACCTTCACGCGCCTGCTGGTGTCGATCTGGCTGCGCCGCGCCCGTCCGAAGGAATTGC CGAAGGCGCCGGTGACCTTCATTCCGCCGGGCACCAAGATCCCCTTCATGGGTATCCGCCGCTGGACGTTCGCGCTGTCG AGCTTCCTGTCGGTGCTGTCCGTGGTGCTGTTCATGACGGTCGACATCAATTACGGCATCGACTTCAAGGGCGGCTCGAT GATCGAGGTGAAGTCCAAGAGCGGCGACGCCAATCTCGGCGATATCCGCGCCAGGCTGATGGAGCTCAACATCGGCGAAG TGCAGGTGCAGCAGTTCGGCGCGCCGAACGACGTGCTGATCCGCGTCGGCACGCAGGATGGCGGCGAGAATGCCGAGCAG ACGGTCATCGACAAGGTACGCGGCGAGTTGCAGGACCAGTATGATTTCCGCCGCGTCGAAGTCGTGGGGCCGACGGTTTC CGGCGAACTGGCCAAGCAAGGCACCATCGCCATGCTTGTCGCGCTGGTTGGCATCCTGGTCTATGTCTGGTTCCGTTTCG AGTGGCAGTTCGCGGTCGGCGCCATCGTTGCGACAGTGCACGATGTGGTCATGACGCTCGGTTTCTTCGTCATCACCGGG CTCGAATTCAACCAGTCGTCGCTGGCGGCGATCCTGACCATCATCGGCTATTCGCTGAACGACACGATCGTGGTCTATGA CCGCGTCCGAGAGGATCTGCGAAAATACAAGCGAATGCCGCTGCCGCAGCTGTTGAACAACGCCATCAACGAGACGCTGT CGCGAACGACGCTGACCTCGGTGACGACGATCCTGGCGTTGCTGGCGCTGGTGCTGTTCGGCGGCGAAGTCATCCGCTCC TTCACCATGGCAATGCTGTTCGGCGTTGTCTTCGGTACCTATTCCTCGATCTTCATCGCGGCACCGCTGCTGATCCTGTT CAAGCTGCGGCCGCAGGCTTCGGCCGACGAGGAGAAGCCGGTCAACGGCGGCAAGGCGGTCGCGACCTGA
Upstream 100 bases:
>100_bases TGTGCGCGTCAAGGGCGAACCGGTGGCCAACCAGAACGCCAAGAAATAACCCAATTCAAGGCGGAGCGATCCGCGGACAC GCTCTGACGGACGACGCCAT
Downstream 100 bases:
>100_bases CGCGCGGCCCCGAAGGGGTGACAGAGTAGTGACCGGCAAAGGCATCGTCATCCGCGAGGCGCATTTCCCCGGCCGCGCGC CGATCGAGGCCTATGGCAAT
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MLYFSRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQNDLIKDRLETTRDEIRT LLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLTDPVAAGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTS TALAQSIEVVERRVNELGTTEPIVQRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSV LYSQDDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNVGKLFAIILDNQVISAPQIRE PILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLA NIALAVHVAMIVGLLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTS LIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVTFIPPGTKIPFMGIRRWTFALS SFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLGDIRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQ TVIDKVRGELQDQYDFRRVEVVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVITG LEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKYKRMPLPQLLNNAINETLSRTTLTSVTTILALLALVLFGGEVIRS FTMAMLFGVVFGTYSSIFIAAPLLILFKLRPQASADEEKPVNGGKAVAT
Sequences:
>Translated_849_residues MLYFSRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQNDLIKDRLETTRDEIRT LLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLTDPVAAGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTS TALAQSIEVVERRVNELGTTEPIVQRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSV LYSQDDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNVGKLFAIILDNQVISAPQIRE PILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLA NIALAVHVAMIVGLLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTS LIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVTFIPPGTKIPFMGIRRWTFALS SFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLGDIRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQ TVIDKVRGELQDQYDFRRVEVVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVITG LEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKYKRMPLPQLLNNAINETLSRTTLTSVTTILALLALVLFGGEVIRS FTMAMLFGVVFGTYSSIFIAAPLLILFKLRPQASADEEKPVNGGKAVAT >Mature_849_residues MLYFSRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQNDLIKDRLETTRDEIRT LLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLTDPVAAGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTS TALAQSIEVVERRVNELGTTEPIVQRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSV LYSQDDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNVGKLFAIILDNQVISAPQIRE PILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLA NIALAVHVAMIVGLLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTS LIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVTFIPPGTKIPFMGIRRWTFALS SFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLGDIRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQ TVIDKVRGELQDQYDFRRVEVVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVITG LEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKYKRMPLPQLLNNAINETLSRTTLTSVTTILALLALVLFGGEVIRS FTMAMLFGVVFGTYSSIFIAAPLLILFKLRPQASADEEKPVNGGKAVAT
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=535, Percent_Identity=37.9439252336449, Blast_Score=313, Evalue=3e-86, Organism=Escherichia coli, GI1786610, Length=287, Percent_Identity=36.5853658536585, Blast_Score=205, Evalue=1e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 91842; Mature: 91842
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: PS50156 SSD ; PS01319 RBFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYFSRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLE CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE MNQNDLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLT ECCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHH DPVAAGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTT HHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCC EPIVQRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSV CHHHHCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCE LYSQDDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNV EECCCCCCCCEEECCEEEECCCCEEECHHHCCCCCCCCEEEEEECCCCCHHHCCHHHHHH GKLFAIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEER HHEEHHEECCCCCCCCCHHCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCCEEEEEECC TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGLLSLLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTS HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVTF HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE IPPGTKIPFMGIRRWTFALSSFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEEECCCCCCCHH DIRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQTVIDKVRGELQDQYDFRRVE HHHHHHHHCCCCCEEHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE VVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVITG EECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKYKRMPLPQLLNNAINETLSRTTLTS CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VTTILALLALVLFGGEVIRSFTMAMLFGVVFGTYSSIFIAAPLLILFKLRPQASADEEKP HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VNGGKAVAT CCCCCCCCC >Mature Secondary Structure MLYFSRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLE CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEE MNQNDLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLT ECCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHH DPVAAGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTT HHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCC EPIVQRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSV CHHHHCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCE LYSQDDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNV EECCCCCCCCEEECCEEEECCCCEEECHHHCCCCCCCCEEEEEECCCCCHHHCCHHHHHH GKLFAIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEER HHEEHHEECCCCCCCCCHHCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCCEEEEEECC TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGLLSLLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTS HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVTF HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE IPPGTKIPFMGIRRWTFALSSFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEEECCCCCCCHH DIRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQTVIDKVRGELQDQYDFRRVE HHHHHHHHCCCCCEEHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE VVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVITG EECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKYKRMPLPQLLNNAINETLSRTTLTS CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VTTILALLALVLFGGEVIRSFTMAMLFGVVFGTYSSIFIAAPLLILFKLRPQASADEEKP HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VNGGKAVAT CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]