Click here to switch to the map view.

The map label for this gene is 13471170

Identifier: 13471170

GI number: 13471170

Start: 894032

End: 894937

Strand: Reverse

Name: 13471170

Synonym: mll1068

Alternate gene names: NA

Gene position: 894937-894032 (Counterclockwise)

Preceding gene: 13471171

Following gene: 13471169

Centisome position: 12.72

GC content: 66.23

Gene sequence:

>906_bases
ATGTCCTCCTGGCGGAAGACCGCGCCGCGGCCGCCGCGCTCATCGCCGTCGATTGATATGTCGCAAAATGCCAAAATCGT
CATGGACGCGGTGCGCGCCGCCGATCATGACCGTTATCTGACGGCACTCTATGCGCCGGCCGACAAGCGCGAAGCGCTGT
TTTCGCTCTACGCTTTCAATGCTGAAATCGCCGGCATCCGCGATCGCATCCATGAAGCATTACCGGGCGAGGTGCGGCTG
CAATGGTGGCGTGACCTCATCGCAGCCGACAATGATGCAGCCATCGGCCATCCCGTCGCCGACGCGCTGAAGGCGACAAT
TTCCGGCCACCACCTGCCGAAACTGGCGTTCGACAACATGCTCGAGGCGCGCATCTTCGATCTCTATGATGATCCGATGC
CGTCGCGCACCGACCTGGAAGGCTATTGCGGCGAGACGGCAGCCGCGCTCATCCAGCTTGCGGCGATGGTGCTCGATCCC
GTCGAGGCGCCCCGCTTTGCCGAATTGGCGGGCAGGGCGGGCTGTGCGCAGGCCATGACCGGGCTCTTGCTTCTGTTGCC
GCTGCACCGCAAGCGCGGGCAGTGTTTTGTCCCGGCCGATATACTGGCGGCGGCGGGGTCGTCGCCGGAGGAGTTTGTTG
CCGGCGATGGCGGGCCGGGTGCGCAGCGCGCGGTGGCCGCGATGATAGCGCTGGCGCGCGAACATCTTTCCGCTTTCGAG
CAGGGCGCTGCAGAGCTGCCGGCATCGCTGCGTCCGGCATTCCTGCCGCTGGCACTGTCGCGCGCCTATCTCGACAGGAC
GGAAGGGGCGCGCCAATCGACGCTCGATGGCGTCGCGCGGCTGTCGGCCTTGCGCCGGCACTGGCTGCTGGTGCGGCGGG
CAAGCAAGGGCTGGCCGGCACTTTGA

Upstream 100 bases:

>100_bases
AAGGATCTCCGGCCTCTGCCAGCGGCGCTGCGGGCGGCGCTGAAAGAGGCTGGCATTGCGTCCGACCCGATGTCGACCGG
GGCTGCGGTGCGGACCTACA

Downstream 100 bases:

>100_bases
CGTAAACGTCAATCGTGCTAAGGATTCGGCCGTGCCGGGAACTGTCGCCAGAGATGACAGGCCGGCCCGGAGGGAATCCA
TGAGCTTGCCCGTTCTGGTC

Product: hypothetical protein

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Squalene Synthase HpnD; Phytoene Synthase Protein; Squalene And Phytoene Synthases Superfamily; Terpenoid Synthase; Squalene; Phytoene/Squalene Synthetase; Phytoene/Squalene Synthetase-Like Protein; Farnesyl-Diphosphate Farnesyltransferase; Phytoene Synthase Family Protein

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSSWRKTAPRPPRSSPSIDMSQNAKIVMDAVRAADHDRYLTALYAPADKREALFSLYAFNAEIAGIRDRIHEALPGEVRL
QWWRDLIAADNDAAIGHPVADALKATISGHHLPKLAFDNMLEARIFDLYDDPMPSRTDLEGYCGETAAALIQLAAMVLDP
VEAPRFAELAGRAGCAQAMTGLLLLLPLHRKRGQCFVPADILAAAGSSPEEFVAGDGGPGAQRAVAAMIALAREHLSAFE
QGAAELPASLRPAFLPLALSRAYLDRTEGARQSTLDGVARLSALRRHWLLVRRASKGWPAL

Sequences:

>Translated_301_residues
MSSWRKTAPRPPRSSPSIDMSQNAKIVMDAVRAADHDRYLTALYAPADKREALFSLYAFNAEIAGIRDRIHEALPGEVRL
QWWRDLIAADNDAAIGHPVADALKATISGHHLPKLAFDNMLEARIFDLYDDPMPSRTDLEGYCGETAAALIQLAAMVLDP
VEAPRFAELAGRAGCAQAMTGLLLLLPLHRKRGQCFVPADILAAAGSSPEEFVAGDGGPGAQRAVAAMIALAREHLSAFE
QGAAELPASLRPAFLPLALSRAYLDRTEGARQSTLDGVARLSALRRHWLLVRRASKGWPAL
>Mature_300_residues
SSWRKTAPRPPRSSPSIDMSQNAKIVMDAVRAADHDRYLTALYAPADKREALFSLYAFNAEIAGIRDRIHEALPGEVRLQ
WWRDLIAADNDAAIGHPVADALKATISGHHLPKLAFDNMLEARIFDLYDDPMPSRTDLEGYCGETAAALIQLAAMVLDPV
EAPRFAELAGRAGCAQAMTGLLLLLPLHRKRGQCFVPADILAAAGSSPEEFVAGDGGPGAQRAVAAMIALAREHLSAFEQ
GAAELPASLRPAFLPLALSRAYLDRTEGARQSTLDGVARLSALRRHWLLVRRASKGWPAL

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=245, Percent_Identity=26.9387755102041, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24641447, Length=271, Percent_Identity=27.3062730627306, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 32588; Mature: 32456

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSWRKTAPRPPRSSPSIDMSQNAKIVMDAVRAADHDRYLTALYAPADKREALFSLYAFN
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHC
AEIAGIRDRIHEALPGEVRLQWWRDLIAADNDAAIGHPVADALKATISGHHLPKLAFDNM
CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
LEARIFDLYDDPMPSRTDLEGYCGETAAALIQLAAMVLDPVEAPRFAELAGRAGCAQAMT
HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHH
GLLLLLPLHRKRGQCFVPADILAAAGSSPEEFVAGDGGPGAQRAVAAMIALAREHLSAFE
HHHHHHHHHHCCCCEECCHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
QGAAELPASLRPAFLPLALSRAYLDRTEGARQSTLDGVARLSALRRHWLLVRRASKGWPA
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
L
C
>Mature Secondary Structure 
SSWRKTAPRPPRSSPSIDMSQNAKIVMDAVRAADHDRYLTALYAPADKREALFSLYAFN
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHC
AEIAGIRDRIHEALPGEVRLQWWRDLIAADNDAAIGHPVADALKATISGHHLPKLAFDNM
CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
LEARIFDLYDDPMPSRTDLEGYCGETAAALIQLAAMVLDPVEAPRFAELAGRAGCAQAMT
HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHH
GLLLLLPLHRKRGQCFVPADILAAAGSSPEEFVAGDGGPGAQRAVAAMIALAREHLSAFE
HHHHHHHHHHCCCCEECCHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
QGAAELPASLRPAFLPLALSRAYLDRTEGARQSTLDGVARLSALRRHWLLVRRASKGWPA
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA