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The map label for this gene is yfdE [H]

Identifier: 13471132

GI number: 13471132

Start: 843760

End: 844977

Strand: Reverse

Name: yfdE [H]

Synonym: mll1018

Alternate gene names: 13471132

Gene position: 844977-843760 (Counterclockwise)

Preceding gene: 13471134

Following gene: 13471131

Centisome position: 12.01

GC content: 61.82

Gene sequence:

>1218_bases
ATGCTCAGCGGCATCAAAGTCGTCAGCTTCTGCCATTTTCTGCAGGGTCCTGCGGGCGCCCAATATCTCGCCGACATGGG
AGCGGATGTGGTCAAGGTCGAACCTATCGATGGGGCCCATGAACGCCGGTGGTCGGGTGCTGACGTTTATGTGGAAGGAG
TCAGCGGCTTCTATCTCTGCGCCAACCGCAACAAGCGCTCCATCGGCATTGATCTGAAGAGCACGGAAGGCAAGCAAGTC
GCCCGACGTCTGATCGCCGGCGCCGATGTGGTGATGGAGAATTTCCGGCCGGGCGTGTTCACCAAGCTTGGCTTTGACGA
GGAAACGCTCCGCGGCATCAACCCCAATCTGATTTTCGCCTCGGCGAGCGGTTTTGGCGCAACAGGCCCGATGGCGATGA
ACCCCGGCCAGGATCTTCTCGCCCAGGCGCGCTCCGGTCTGATGAGCGTGACCGGAACGCCGGAACGTGGCCCTACGCCG
GTCGGTGCAGCGATCGTCGACCAACATGGCGGGGCACTTCTGGCGATGGGCATTCTCGGTGCATTGGTGCGCCGCCTGCG
GGACGGCAAGGGGACTCGCGTCGAGGCAAGCCTGATCAATGCCGCAATCGATCTGCAAGGCGAGCCCCTGGTCAATTACT
TCGCTGGCGGGATGACCCGCGAGGTGTTGAACCGTGAGAAAAACCTGGCCACCTGGTTTCATGCAGCGCCCTACGGCGTA
TACCCTGCCACCGACGGCCATGTGGTCGTGTCGCTGTGCGAATCCGCCGTGCTGGCCGATGCGCTCGACAGTGATGCCCT
GCGCGAGCTAGTCGGCGTCGACCGCTATGTCGAACGCGATGACTATGCGCGCCGACTGGCCGGCGCTACAGCGCGGTTCA
CTACTGCCGAACTTGCCGAGCGCTTTGATCGTCATGGCATCTGGTGGGCGCCTATCAATTATTACGACGATCTGCTGGCC
GACCCGCAGCTCAGCCATTCCCACGTGTTTCGGCAGGTGAACGTGCGTGGCCGCACGATACAGTTGGTCAACCATCCCAA
CCGCTACGACGGCGAGGTGCCCGCGCTGCGATACCTCGCTTTGGAGATCGGCGAGCACACACACGAGATCCTAGACGAGC
TTGGCTATGCGGAAGTTGAGATCCAGCGCCTGCTGACGTCAAAGGCCGTGGTCGCATCCCGCGAAAAGGATGATGCGGTG
GCAAGGAAGGCTTCGTGA

Upstream 100 bases:

>100_bases
TTTGACAAAGCCTTTCAAATTGGGCTTGACAGCTATAAGAAAAGGCGTGAAAACGATTTCACAAAGGCGCAACTAATAGC
GCGGAACCAAGGGAAGAGAA

Downstream 100 bases:

>100_bases
TGCTGGAACAGGTTTCCCCGGCTGCAATCGGCGCTGCTATGCCCGAGAAAGCAGCGTCCATCAACCGCGGGCTTGCCATT
GTGACGGGAGGCCGTCGTGG

Product: racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MLSGIKVVSFCHFLQGPAGAQYLADMGADVVKVEPIDGAHERRWSGADVYVEGVSGFYLCANRNKRSIGIDLKSTEGKQV
ARRLIAGADVVMENFRPGVFTKLGFDEETLRGINPNLIFASASGFGATGPMAMNPGQDLLAQARSGLMSVTGTPERGPTP
VGAAIVDQHGGALLAMGILGALVRRLRDGKGTRVEASLINAAIDLQGEPLVNYFAGGMTREVLNREKNLATWFHAAPYGV
YPATDGHVVVSLCESAVLADALDSDALRELVGVDRYVERDDYARRLAGATARFTTAELAERFDRHGIWWAPINYYDDLLA
DPQLSHSHVFRQVNVRGRTIQLVNHPNRYDGEVPALRYLALEIGEHTHEILDELGYAEVEIQRLLTSKAVVASREKDDAV
ARKAS

Sequences:

>Translated_405_residues
MLSGIKVVSFCHFLQGPAGAQYLADMGADVVKVEPIDGAHERRWSGADVYVEGVSGFYLCANRNKRSIGIDLKSTEGKQV
ARRLIAGADVVMENFRPGVFTKLGFDEETLRGINPNLIFASASGFGATGPMAMNPGQDLLAQARSGLMSVTGTPERGPTP
VGAAIVDQHGGALLAMGILGALVRRLRDGKGTRVEASLINAAIDLQGEPLVNYFAGGMTREVLNREKNLATWFHAAPYGV
YPATDGHVVVSLCESAVLADALDSDALRELVGVDRYVERDDYARRLAGATARFTTAELAERFDRHGIWWAPINYYDDLLA
DPQLSHSHVFRQVNVRGRTIQLVNHPNRYDGEVPALRYLALEIGEHTHEILDELGYAEVEIQRLLTSKAVVASREKDDAV
ARKAS
>Mature_405_residues
MLSGIKVVSFCHFLQGPAGAQYLADMGADVVKVEPIDGAHERRWSGADVYVEGVSGFYLCANRNKRSIGIDLKSTEGKQV
ARRLIAGADVVMENFRPGVFTKLGFDEETLRGINPNLIFASASGFGATGPMAMNPGQDLLAQARSGLMSVTGTPERGPTP
VGAAIVDQHGGALLAMGILGALVRRLRDGKGTRVEASLINAAIDLQGEPLVNYFAGGMTREVLNREKNLATWFHAAPYGV
YPATDGHVVVSLCESAVLADALDSDALRELVGVDRYVERDDYARRLAGATARFTTAELAERFDRHGIWWAPINYYDDLLA
DPQLSHSHVFRQVNVRGRTIQLVNHPNRYDGEVPALRYLALEIGEHTHEILDELGYAEVEIQRLLTSKAVVASREKDDAV
ARKAS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=412, Percent_Identity=29.3689320388349, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI300863124, Length=430, Percent_Identity=29.3023255813954, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI42794625, Length=418, Percent_Identity=29.9043062200957, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI266456254, Length=417, Percent_Identity=29.7362110311751, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI13376042, Length=430, Percent_Identity=26.5116279069767, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI300863126, Length=155, Percent_Identity=40, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=38.5, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=38.5, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=40.6896551724138, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=40.6896551724138, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=31.6753926701571, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=38.0487804878049, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=23.6907730673317, Blast_Score=96, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=201, Percent_Identity=33.8308457711443, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=201, Percent_Identity=31.3432835820896, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=28.7153652392947, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24585488, Length=202, Percent_Identity=36.6336633663366, Blast_Score=110, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44011; Mature: 44011

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGIKVVSFCHFLQGPAGAQYLADMGADVVKVEPIDGAHERRWSGADVYVEGVSGFYLC
CCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEEECCCCHHHCCCCCCCEEEECCCEEEEE
ANRNKRSIGIDLKSTEGKQVARRLIAGADVVMENFRPGVFTKLGFDEETLRGINPNLIFA
ECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCEEEE
SASGFGATGPMAMNPGQDLLAQARSGLMSVTGTPERGPTPVGAAIVDQHGGALLAMGILG
ECCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHH
ALVRRLRDGKGTRVEASLINAAIDLQGEPLVNYFAGGMTREVLNREKNLATWFHAAPYGV
HHHHHHHCCCCCEEEHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCHHHHEECCCCCC
YPATDGHVVVSLCESAVLADALDSDALRELVGVDRYVERDDYARRLAGATARFTTAELAE
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RFDRHGIWWAPINYYDDLLADPQLSHSHVFRQVNVRGRTIQLVNHPNRYDGEVPALRYLA
HHHHCCEEEEECCHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
LEIGEHTHEILDELGYAEVEIQRLLTSKAVVASREKDDAVARKAS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MLSGIKVVSFCHFLQGPAGAQYLADMGADVVKVEPIDGAHERRWSGADVYVEGVSGFYLC
CCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEEECCCCHHHCCCCCCCEEEECCCEEEEE
ANRNKRSIGIDLKSTEGKQVARRLIAGADVVMENFRPGVFTKLGFDEETLRGINPNLIFA
ECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCEEEE
SASGFGATGPMAMNPGQDLLAQARSGLMSVTGTPERGPTPVGAAIVDQHGGALLAMGILG
ECCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHH
ALVRRLRDGKGTRVEASLINAAIDLQGEPLVNYFAGGMTREVLNREKNLATWFHAAPYGV
HHHHHHHCCCCCEEEHHHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCHHHHEECCCCCC
YPATDGHVVVSLCESAVLADALDSDALRELVGVDRYVERDDYARRLAGATARFTTAELAE
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RFDRHGIWWAPINYYDDLLADPQLSHSHVFRQVNVRGRTIQLVNHPNRYDGEVPALRYLA
HHHHCCEEEEECCHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
LEIGEHTHEILDELGYAEVEIQRLLTSKAVVASREKDDAVARKAS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]