| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is ytfR [C]
Identifier: 13471117
GI number: 13471117
Start: 827632
End: 828420
Strand: Reverse
Name: ytfR [C]
Synonym: mll1002
Alternate gene names: 13471117
Gene position: 828420-827632 (Counterclockwise)
Preceding gene: 13471118
Following gene: 13471116
Centisome position: 11.77
GC content: 61.09
Gene sequence:
>789_bases ATGGCCACATCCCAAACGCCCCTCATTGAGGTCAAGGACATCGTCAAGCATTTCGGCTCGGTCATTGCGCTGAACGGTGT GTCGATGAGCGTGAATGCGCATGAGGTGCTCTGCTTGCTGGGCGATAACGGCGCCGGCAAGTCGACGCTGATCAACACGC TTGCCGGCGTGCACAAGCCGACGTCCGGACAATTCCTGGTCGAGGGGCAGCCCCGGCTCTTTGCGGGACCGCGCGATGCC CTCGATGCCGGCATTGCCACCGTTTATCAGGACCTCGCCATGATCCCGCTGATGTCGGTGACCCGCAACTTCTTCATGGG GCGCGAGCCCGTGGTCGGTTTCGGGCCTTTCAAACGCATGGACATGGAGCACGCCGACAACGTCACACGAGACGAGATGC ACAGGATCGGCATCGACGTGCGCGACCCTCAGCAGGCTGTTGGAACGCTTTCAGGCGGCGAGCGTCAGTGTGTTGCGATT GCCCGCGCGGTTTATTTCGGCGCCAAGGTCCTCATCCTGGACGAGCCGACTTCCGCTCTTGGCGTTGCCCAGACCTCCAT GGTGCTGAAGTACATCGGCCAGGTCCGCAACAAGGGTCTCGGCGTGATCTTCATCACCCACAATGTCCGTCACGCCTATG CCGTCGGCGACCGCTTCACGGTGCTCAATCGCGGCAAGACGCTCGGCACTTATAGGAAAGATCAGATCGGCATCGACGAG CTCCAGAACCTGATGGCAGGCGGCAAGGAGCTGCAGTCGCTCTCAGAGGAACTCGGCGGAACGATCTGA
Upstream 100 bases:
>100_bases CGATCGACCAGGATTGGTACCTCGTCTTTCTGGGCGGCATGCTGCTGATCGCGGTGATTTTCAACAATGTCATCCGCAAG CGCGTAACGGGAGAACGCTG
Downstream 100 bases:
>100_bases TCGAGAGCTTTTCACATGTCGGTGCGGCGCAATCGCGCCGCACCACTCATCGTCATACCCACAATTCGAGAACCGCCAAT GAGTGTATCCACGACCGCTC
Product: ATP-binding protein of sugar ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MATSQTPLIEVKDIVKHFGSVIALNGVSMSVNAHEVLCLLGDNGAGKSTLINTLAGVHKPTSGQFLVEGQPRLFAGPRDA LDAGIATVYQDLAMIPLMSVTRNFFMGREPVVGFGPFKRMDMEHADNVTRDEMHRIGIDVRDPQQAVGTLSGGERQCVAI ARAVYFGAKVLILDEPTSALGVAQTSMVLKYIGQVRNKGLGVIFITHNVRHAYAVGDRFTVLNRGKTLGTYRKDQIGIDE LQNLMAGGKELQSLSEELGGTI
Sequences:
>Translated_262_residues MATSQTPLIEVKDIVKHFGSVIALNGVSMSVNAHEVLCLLGDNGAGKSTLINTLAGVHKPTSGQFLVEGQPRLFAGPRDA LDAGIATVYQDLAMIPLMSVTRNFFMGREPVVGFGPFKRMDMEHADNVTRDEMHRIGIDVRDPQQAVGTLSGGERQCVAI ARAVYFGAKVLILDEPTSALGVAQTSMVLKYIGQVRNKGLGVIFITHNVRHAYAVGDRFTVLNRGKTLGTYRKDQIGIDE LQNLMAGGKELQSLSEELGGTI >Mature_261_residues ATSQTPLIEVKDIVKHFGSVIALNGVSMSVNAHEVLCLLGDNGAGKSTLINTLAGVHKPTSGQFLVEGQPRLFAGPRDAL DAGIATVYQDLAMIPLMSVTRNFFMGREPVVGFGPFKRMDMEHADNVTRDEMHRIGIDVRDPQQAVGTLSGGERQCVAIA RAVYFGAKVLILDEPTSALGVAQTSMVLKYIGQVRNKGLGVIFITHNVRHAYAVGDRFTVLNRGKTLGTYRKDQIGIDEL QNLMAGGKELQSLSEELGGTI
Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=25.9414225941423, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI31657092, Length=234, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI105990541, Length=253, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=24.0909090909091, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI150417984, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI6005701, Length=225, Percent_Identity=30.6666666666667, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI153792144, Length=247, Percent_Identity=27.5303643724696, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI42741659, Length=194, Percent_Identity=31.4432989690722, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI48995001, Length=256, Percent_Identity=38.28125, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1788472, Length=252, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=1e-37, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=33.7448559670782, Blast_Score=147, Evalue=7e-37, Organism=Escherichia coli, GI1788210, Length=243, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1789991, Length=250, Percent_Identity=32.4, Blast_Score=134, Evalue=8e-33, Organism=Escherichia coli, GI1790525, Length=248, Percent_Identity=31.8548387096774, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1788897, Length=253, Percent_Identity=32.4110671936759, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1787792, Length=258, Percent_Identity=28.6821705426357, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI87081791, Length=231, Percent_Identity=32.034632034632, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=28.8888888888889, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=33.6322869955157, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=27.5, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081709, Length=227, Percent_Identity=28.1938325991189, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI87082268, Length=220, Percent_Identity=29.5454545454545, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.8245614035088, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787105, Length=214, Percent_Identity=32.2429906542056, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=29.535864978903, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789962, Length=252, Percent_Identity=29.7619047619048, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787758, Length=207, Percent_Identity=29.951690821256, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787370, Length=255, Percent_Identity=29.8039215686275, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787500, Length=245, Percent_Identity=28.9795918367347, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=27.2727272727273, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=31.063829787234, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=30.5164319248826, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1787164, Length=260, Percent_Identity=28.0769230769231, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=32.3943661971831, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=25.6521739130435, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790544, Length=232, Percent_Identity=29.7413793103448, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=26.6375545851528, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786872, Length=231, Percent_Identity=27.7056277056277, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=30.0469483568075, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=30, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=26.027397260274, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1790162, Length=245, Percent_Identity=26.1224489795918, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082267, Length=219, Percent_Identity=29.2237442922374, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=222, Percent_Identity=27.9279279279279, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=30.0492610837438, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789593, Length=230, Percent_Identity=27.3913043478261, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787547, Length=233, Percent_Identity=24.4635193133047, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=29.1479820627803, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790534, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=26.3636363636364, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=226, Percent_Identity=28.3185840707965, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=223, Percent_Identity=25.1121076233184, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788002, Length=224, Percent_Identity=29.4642857142857, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081782, Length=232, Percent_Identity=28.448275862069, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=28.0487804878049, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788053, Length=233, Percent_Identity=27.8969957081545, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787112, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1786703, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788450, Length=222, Percent_Identity=22.0720720720721, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI145693107, Length=234, Percent_Identity=28.6324786324786, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI2367384, Length=177, Percent_Identity=26.5536723163842, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=264, Percent_Identity=28.030303030303, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17543740, Length=200, Percent_Identity=30, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=183, Percent_Identity=29.5081967213115, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI221512771, Length=219, Percent_Identity=27.3972602739726, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI116007184, Length=227, Percent_Identity=26.8722466960352, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221500365, Length=227, Percent_Identity=26.8722466960352, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=23.4741784037559, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI28574150, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007328, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=23.8532110091743, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015862 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28235; Mature: 28104
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSQTPLIEVKDIVKHFGSVIALNGVSMSVNAHEVLCLLGDNGAGKSTLINTLAGVHKP CCCCCCCCHHHHHHHHHHCCEEEECCEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCC TSGQFLVEGQPRLFAGPRDALDAGIATVYQDLAMIPLMSVTRNFFMGREPVVGFGPFKRM CCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC DMEHADNVTRDEMHRIGIDVRDPQQAVGTLSGGERQCVAIARAVYFGAKVLILDEPTSAL CHHHCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHH GVAQTSMVLKYIGQVRNKGLGVIFITHNVRHAYAVGDRFTVLNRGKTLGTYRKDQIGIDE HHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCHHH LQNLMAGGKELQSLSEELGGTI HHHHHHCHHHHHHHHHHHCCCC >Mature Secondary Structure ATSQTPLIEVKDIVKHFGSVIALNGVSMSVNAHEVLCLLGDNGAGKSTLINTLAGVHKP CCCCCCCHHHHHHHHHHCCEEEECCEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCC TSGQFLVEGQPRLFAGPRDALDAGIATVYQDLAMIPLMSVTRNFFMGREPVVGFGPFKRM CCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC DMEHADNVTRDEMHRIGIDVRDPQQAVGTLSGGERQCVAIARAVYFGAKVLILDEPTSAL CHHHCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHH GVAQTSMVLKYIGQVRNKGLGVIFITHNVRHAYAVGDRFTVLNRGKTLGTYRKDQIGIDE HHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCHHH LQNLMAGGKELQSLSEELGGTI HHHHHHCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA