Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
---|---|
Accession | NC_002678 |
Length | 7,036,071 |
Click here to switch to the map view.
The map label for this gene is recG [H]
Identifier: 13470981
GI number: 13470981
Start: 660366
End: 662474
Strand: Direct
Name: recG [H]
Synonym: mlr0830
Alternate gene names: 13470981
Gene position: 660366-662474 (Clockwise)
Preceding gene: 13470977
Following gene: 13470984
Centisome position: 9.39
GC content: 67.61
Gene sequence:
>2109_bases ATGCGTCCTTCCATCCTCGATCCGCTGTTTGTTCCGATCACTTCGCTTGCCGGCGTCGGACCGAAGGTCGGCGCGCTGAT CGAGAAGGTCGTCACGGCTGATCTTGGTGATCGCGCGGCCCGCGCGGGCGACCTTCTGTTCGTGCTGCCGCATACCGTTA TCGACCGCCGCAGCCGGCCGGGCATCGCCGGTTCCGCGGAAGGCCAGATCGTTACCCTCGACGTGCGCATCGACCGCCAC CAGCCGCCGCCACGCGGCAACCGGTCGGTGCCCTACAGGGTCTACGCCCATGACGATACCGGCGAAATCGGCCTGACCTT TTTCCATGCGCACGCCGCCTATCTCGAAAAGGCAATGCCCGTCGGCGAGCATGTCGTGGTCTCGGGCCGCATGGAATGGT TCAACGGCCGCCCGACCATGGTCCACCCCGACCACATCGCGTTGGCCAGCGAGGCGGAAAACCTGCCACTGGTCGAGCCG GTCTATCCGCTCACCGCGGGTCTCTCCGGCAAGGTGCTGCGCCGTGCGATCGGCCAGGCGTTGGCGCGGCTGCCCGAATT GCCGGAGTGGCAGGACGTCGCCTTCATGCGCCGGCACACCTTTCCCACCTTTGCCGACGCACTCACCCGCATCCACAATC CAGCCGACCCGATCGATGTTTCCATCGAGGGTGCGGCCTGGCGGCGTCTTGCCTATGACGAGTTGCTGGCGGGCCAGGTC TCGCTGGCGCTGGTGCGGGCAAAGATCCGCCGCCTGTCCGGCCGCCCCCTGGTCGGCGACGGCCGCATCGTCGAGAAACT GCGCGCAGCCCTTCCCTATTCGCTGACCGCAAGCCAGGAATTCGCGCTGGCCGAAATCAATGCCGACCTTGCCGACCCCG AGCGCATGCTGCGGCTGCTGCAGGGCGATGTCGGATCGGGCAAGACGGTGGTCGCGCTGCTTGCCATGGCGCGCGCCGTC GAGGCCGGCGGCCAGGCAGCGCTGATGGCGCCGACCGAAATCCTGGCGCGCCAGCACCTGGCGACGATCGCCCCGTTCGC CGCCAAGGTCGGGCTGCGCATCGCCATCCTCACCGGCCGCGAAAAGGGCCGCGAACGCACCGAAACACTGGCCGGCCTGG CCAGCGGCGAGATCGACATCGTCGTCGGCACCCACGCGCTGTTCCAGGAGACGGTCACCTTCCACGATCTGGTGCTGGCT GTCATCGACGAGCAGCATCGCTTCGGCGTTCACCAGCGGCTCGCCATCACCGCCAAGGGCGATGCGCCCGACATGCTGGT GATGACCGCCACACCGATCCCGCGCACGCTGGTGCTGACCGCCTTCGGCGACATGGACGTCTCCAAGCTGACGGAAAAAC CGGCCGGCCGACAGCCGATCCGCACCGTCACGCTGCCGCTGGAGCGGCTCGACGAACTGGTCGCCCGCATGCAGGATGCC GTCGCCGGCGGCCAGAAAATCTACTGGATCTGCCCGCTGGTCGAGGAATCCGAAGAGATCAAGCTGATGTCGGCCGAGGA TCGCTTTGCCTCGCTGAAACCGCTGTTCGGCGACCGCATCGGCCTTGTCCACGGCCGCATGAAGGGCGCCGAGAAGGACG AGGCGATGCGCGCCTTCAAGGAGGGCGAAACCCGCATCCTGATCGCCACCACGGTCATCGAGGTCGGCGTCGATGTTCCC GACGCCACCGTCATGGTCATCGAGCATGCCGAGCGTTTCGGCCTCGCACAGCTGCACCAGCTGCGCGGGCGGGTCGGGCG CGGCGACAAGCCCTCCTCTTGCGTGCTGCTCTACAAGGACCCGCTCGGCGAGACGGCAAAACGCCGGCTGTCGGTGATGC GCGAGACCGAAGACGGCTTTTTGATCGCCGAGGAAGACCTCAAGCTGCGCGGTGAAGGCGAGCTGTTGGGCACCCGCCAG TCCGGCACACCGGGTTTCCAGGTGGCGCGCATCGAGGCGCATGCCGATCTTCTGGAGGCCGCCCGCGACGATGCCAGGCT TATCCTGTCGCGCGACCCGGAGCTGCAATCCGACCGCGGCGAGGCGCTGCGCCTGCTGCTCTATCTGTTCGGCCGCGACG AGGCCGTGCGGCTCCTGCGGGCCGGGTGA
Upstream 100 bases:
>100_bases CCGGTCATTGCGGCGCATCCTCACTTGCTGCGGCGCATATAGCGTGGATAGAAGGGGCTGTCAGCCTTGCGCTGTAGCCG TCGCGACATAAGCTGACATC
Downstream 100 bases:
>100_bases GACCCTAATGGCGGATTGGCGACCGTTCCGTTGATCGGCTCGCCATTCAGCGTCACCATCTTGCTTTTCACCTCCGGCGC CACCAGCCCTGCAGAAACAA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 702; Mature: 702
Protein sequence:
>702_residues MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRPGIAGSAEGQIVTLDVRIDRH QPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMPVGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEP VYPLTAGLSGKVLRRAIGQALARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLLQGDVGSGKTVVALLAMARAV EAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGREKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLA VIDEQHRFGVHQRLAITAKGDAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFKEGETRILIATTVIEVGVDVP DATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKDPLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQ SGTPGFQVARIEAHADLLEAARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG
Sequences:
>Translated_702_residues MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRPGIAGSAEGQIVTLDVRIDRH QPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMPVGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEP VYPLTAGLSGKVLRRAIGQALARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLLQGDVGSGKTVVALLAMARAV EAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGREKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLA VIDEQHRFGVHQRLAITAKGDAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFKEGETRILIATTVIEVGVDVP DATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKDPLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQ SGTPGFQVARIEAHADLLEAARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG >Mature_702_residues MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRPGIAGSAEGQIVTLDVRIDRH QPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMPVGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEP VYPLTAGLSGKVLRRAIGQALARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLLQGDVGSGKTVVALLAMARAV EAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGREKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLA VIDEQHRFGVHQRLAITAKGDAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFKEGETRILIATTVIEVGVDVP DATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKDPLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQ SGTPGFQVARIEAHADLLEAARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=693, Percent_Identity=41.4141414141414, Blast_Score=461, Evalue=1e-131, Organism=Escherichia coli, GI1787357, Length=418, Percent_Identity=38.9952153110048, Blast_Score=251, Evalue=2e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 76660; Mature: 76660
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRP CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCHHHHCCCCCC GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMP CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCCC VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA CCCEEEEECCEEEECCCCCEECCCCEEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH LARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV HHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHH SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCEEEEECCCCCCCHHHHHHHH QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGR HCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEECC EKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLAVIDEQHRFGVHQRLAITAKG CCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECC DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA CCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHH VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK HCCCCEEEEEECCCCCCCCEEEEECCCHHHHCCCHHCCCEEEEECCCCCCCHHHHHHHHH EGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD CCCCEEEEEEEEEECCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEC PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA CCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEECCCCCCCEEEEEEHHHHHHHHH ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC >Mature Secondary Structure MRPSILDPLFVPITSLAGVGPKVGALIEKVVTADLGDRAARAGDLLFVLPHTVIDRRSRP CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCHHHHCCCCCC GIAGSAEGQIVTLDVRIDRHQPPPRGNRSVPYRVYAHDDTGEIGLTFFHAHAAYLEKAMP CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCCC VGEHVVVSGRMEWFNGRPTMVHPDHIALASEAENLPLVEPVYPLTAGLSGKVLRRAIGQA CCCEEEEECCEEEECCCCCEECCCCEEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH LARLPELPEWQDVAFMRRHTFPTFADALTRIHNPADPIDVSIEGAAWRRLAYDELLAGQV HHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHH SLALVRAKIRRLSGRPLVGDGRIVEKLRAALPYSLTASQEFALAEINADLADPERMLRLL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCEEEEECCCCCCCHHHHHHHH QGDVGSGKTVVALLAMARAVEAGGQAALMAPTEILARQHLATIAPFAAKVGLRIAILTGR HCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEECC EKGRERTETLAGLASGEIDIVVGTHALFQETVTFHDLVLAVIDEQHRFGVHQRLAITAKG CCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECC DAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQPIRTVTLPLERLDELVARMQDA CCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHH VAGGQKIYWICPLVEESEEIKLMSAEDRFASLKPLFGDRIGLVHGRMKGAEKDEAMRAFK HCCCCEEEEEECCCCCCCCEEEEECCCHHHHCCCHHCCCEEEEECCCCCCCHHHHHHHHH EGETRILIATTVIEVGVDVPDATVMVIEHAERFGLAQLHQLRGRVGRGDKPSSCVLLYKD CCCCEEEEEEEEEECCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEC PLGETAKRRLSVMRETEDGFLIAEEDLKLRGEGELLGTRQSGTPGFQVARIEAHADLLEA CCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEECCCCCCCEEEEEEHHHHHHHHH ARDDARLILSRDPELQSDRGEALRLLLYLFGRDEAVRLLRAG CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]