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The map label for this gene is yqgF [C]

Identifier: 13470868

GI number: 13470868

Start: 533027

End: 533527

Strand: Direct

Name: yqgF [C]

Synonym: mlr0681

Alternate gene names: 13470868

Gene position: 533027-533527 (Clockwise)

Preceding gene: 13470861

Following gene: 13470869

Centisome position: 7.58

GC content: 65.87

Gene sequence:

>501_bases
TTGCCGGCATGGCTCGCCGACGGCAGGACGCTGGCGGGGCTCGATCTCGGCGACAAGACGATCGGCGTCGCGGTTTCCGA
CCGGGGGTTCGCCTTCGCTCACCCGCGCCCCGTCATCATGCGACGGAAATTCTCGCTCGATGCCGCCGTGCTCCTGGCCT
TGCTGAAGAAGGAGAATGTCGGCGCGGTGGCGATCGGGCTGCCGATCAACATGGATGGGTCGGAAGGTCCGCGCGCGCAG
AAATCGCGCGCCTTCGTGCGCAACATGGCGCAGCTGAGCGACCTGCCCTTCGTGTTCTGGGATGAACGGCTGTCGACGGT
GGCGGCCGAGAGGACGCTGATCGAAATGGATTTCTCGCGCGCCAAACGTGCCGGCAAGATCGATTCGGCGGCCGCGGCCT
TTATTCTGCAGGGAGTCTTGGACCGGCTTCAGTCGCTCGATTCAGCCGCTCGAACGGAATTGGGCGGTCGAACGGAGCCG
GGCCCGACCGACGCCGCTTGA

Upstream 100 bases:

>100_bases
CCCCGAGAGCAAAGGGTATAGTGTCCGCCGCGCATCCGGAAGGACGCATGCTGCTGAAAAAGATGAGGGAAAACCGTTGG
CTATCATCACGATTGAGCAA

Downstream 100 bases:

>100_bases
CCCAGTCCAGAATTTCGCGGCGGCGGCGAAAAGCCCATATCGCCATCAGCAGAAACCCGTCGAAGATACAGGCCTTTCCC
ACCATCCCCGGGATGATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVAIGLPINMDGSEGPRAQ
KSRAFVRNMAQLSDLPFVFWDERLSTVAAERTLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLDSAARTELGGRTEP
GPTDAA

Sequences:

>Translated_166_residues
MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVAIGLPINMDGSEGPRAQ
KSRAFVRNMAQLSDLPFVFWDERLSTVAAERTLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLDSAARTELGGRTEP
GPTDAA
>Mature_165_residues
PAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVAIGLPINMDGSEGPRAQK
SRAFVRNMAQLSDLPFVFWDERLSTVAAERTLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLDSAARTELGGRTEPG
PTDAA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=37.593984962406, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RHILO (Q98M90)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_102437.1
- ProteinModelPortal:   Q98M90
- SMR:   Q98M90
- GeneID:   1225100
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr0681
- NMPDR:   fig|266835.1.peg.542
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17792; Mature: 17660

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENV
CCCCCCCCCEEECCCCCCCEEEEEECCCCEEECCCCCEEEHCCCCCCHHHHHHHHHCCCC
GAVAIGLPINMDGSEGPRAQKSRAFVRNMAQLSDLPFVFWDERLSTVAAERTLIEMDFSR
CEEEEECEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHH
AKRAGKIDSAAAAFILQGVLDRLQSLDSAARTELGGRTEPGPTDAA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PAWLADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENV
CCCCCCCCEEECCCCCCCEEEEEECCCCEEECCCCCEEEHCCCCCCHHHHHHHHHCCCC
GAVAIGLPINMDGSEGPRAQKSRAFVRNMAQLSDLPFVFWDERLSTVAAERTLIEMDFSR
CEEEEECEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHH
AKRAGKIDSAAAAFILQGVLDRLQSLDSAARTELGGRTEPGPTDAA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968