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Identifier: 13358053

GI number: 13358053

Start: 588434

End: 588901

Strand: Direct

Name: Not Available

Synonym: UU490

Alternate gene names: 13358053

Gene position: 588434-588901 (Clockwise)

Preceding gene: 13358047

Following gene: 13358054

Centisome position: 78.28

GC content: 24.57

Gene sequence:

>468_bases
ATGCATTTTTTAATAACGAATGAAGTTAAAAAAATCTTTAATGATAAATTATATTCACAGCGTTTTAAACAAATAACCGA
TTTGGTCTCCACAAAATTAAATATTGATAAAAAGCGATTTTTTGAATGTCATTTTGTTGATGAAAAAACGATACAAGAAA
TTAATAAAAACTATCGTAATAAAGACTATATTACAGATGTTATTAGTTTTGCATTTGATGATGGCGAAATTATTACTCCT
TTATTGGGAGAAATGTACATTTGCTATCAAAAGGTTGTTGATCAAGCAAGTCAATTTGCTCATTCATTCGAACGTGAACT
ATGCTTTTTATTTACACATGGTTTACTTCATTTATTAGGTTATGATCATATAAAAATTGAAGATGAAAAAATTATGTTTG
CTTTACAAGATGAAATTTTAAATGAATTAAAAATTACAAGAAATATAAATGGTGCTAGAAATGATTAA

Upstream 100 bases:

>100_bases
GTTTTAGATTATTTTAGAAAATAAATAATGGAGTAATATGTTAAGGTTATAATTATTTATAATTTAATTATATTAGAAAA
AACAATTTAATAAGGATGTT

Downstream 100 bases:

>100_bases
AAAATACGGAATCGTAGCTATTGTTGGAAAACCAAATGTTGGTAAATCAACATTAATCAATGCGATTATGAAAAAAAAAG
TCTCAATCATTTCAAATAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MHFLITNEVKKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFECHFVDEKTIQEINKNYRNKDYITDVISFAFDDGEIITP
LLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHIKIEDEKIMFALQDEILNELKITRNINGARND

Sequences:

>Translated_155_residues
MHFLITNEVKKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFECHFVDEKTIQEINKNYRNKDYITDVISFAFDDGEIITP
LLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHIKIEDEKIMFALQDEILNELKITRNINGARND
>Mature_155_residues
MHFLITNEVKKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFECHFVDEKTIQEINKNYRNKDYITDVISFAFDDGEIITP
LLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHIKIEDEKIMFALQDEILNELKITRNINGARND

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=100, Percent_Identity=38, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_UREP2 (B1AJD0)

Other databases:

- EMBL:   CP000942
- RefSeq:   YP_001752574.1
- ProteinModelPortal:   B1AJD0
- SMR:   B1AJD0
- GeneID:   6155201
- GenomeReviews:   CP000942_GR
- KEGG:   upa:UPA3_0508
- HOGENOM:   HBG734136
- OMA:   ETLAMEK
- ProtClustDB:   CLSK2298963
- BioCyc:   UPAR505682:UPA3_0508-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18449; Mature: 18449

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFLITNEVKKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFECHFVDEKTIQEINKNYRN
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCHHHHHHHHHHCCC
KDYITDVISFAFDDGEIITPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDHIKIEDEKIMFALQDEILNELKITRNINGARND
CCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHFLITNEVKKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFECHFVDEKTIQEINKNYRN
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCHHHHHHHHHHCCC
KDYITDVISFAFDDGEIITPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDHIKIEDEKIMFALQDEILNELKITRNINGARND
CCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA