Definition Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome.
Accession NC_002162
Length 751,719

Click here to switch to the map view.

The map label for this gene is mod

Identifier: 13358040

GI number: 13358040

Start: 548525

End: 549607

Strand: Reverse

Name: mod

Synonym: UU477

Alternate gene names: 13358040

Gene position: 549607-548525 (Counterclockwise)

Preceding gene: 13358041

Following gene: 13358039

Centisome position: 73.11

GC content: 23.55

Gene sequence:

>1083_bases
ATGATGAACGAACGTTTAAAATTAGCTAAAAACTTACTTAAAAATGATGGTGTAATTTTTGTATCCATTGACGATAATGA
ACAAGCATACTTAAAAGTTTTGATGGATGAAATTTTTGGCGAAGAGAATTTTGTTACAAATTTTATTTGGCAAAAGAAAT
CTGGTGGTGGTTTGAATAAATTAATATATGAAGGCCATGAGTATATATTATGTTATTCAAAAAATAATTACAATTTTTGT
CTTTCTGAAAAAAATAAAAAAATGAGTGGTTTTATTAAATATAAAGATAAAAACAATAATTCTTTTTTTATAAATAGCGA
TATTATTAGAAATAATTTTGGAAAAAAAGATAATAAATTCGAACATAGAAACAAAGCTTATGAAGATTTATCTAAAGAAG
ATAAAGAAAAATGAAATTTAAAATTAGATAATAAAAATTATATTTTAGTTCCATTTAAAAAAGAGCCAGGAAAGCATTTA
GTAGCAAAAATATTTAATGATGAAAGAAAAACTACTTATAGCATAATTAAACTTCCATTTACTTTTGTGTCAGGTATTTG
AACTAAAGATGGAAATAATGAAGTTGATTCATTAAATATAGATTTTCAAAACCCAAAACCAATTCAATTGATAATGCATT
TATTAGATTTACATTCCAATAAAAATGCTCGTGTTTTAGATTTCTTCGCAGGATCTGGAACAACTGGTCATGCAGTATTA
GAATTAAATAAAGAAGATGGTGGAAATCGAACATTCACATTAATAACAAACAATGAAAATCAAATAGGCACTAATGTTTG
TTATGAACGCTTATATCGTATCAACAATGGTATTGGAACTAAAAACGAAATCGATTTTGATTGAGTTAGTAAAAATAAAC
CATATTTAAATAAACTAAATGTTTATGATTTAAAATATTTTGACACTAATCCAATTGAAGTTGATAATAGCAAGATTAAA
AAAGTATTTGCTAAAATGTTAGTTGATTTTAATAATACAAGTCAATCAAGTTTATTTGAAAATAACCAACGCGAATTATT
AATTAATTTAAGTACACTAAAACCAATTGAAAAAAAGGAATAA

Upstream 100 bases:

>100_bases
AGCAAGCAAGACTGATGGTAATAATTTTAGCGAAAAAGATGATGTAGTTGCATCTAAGTTTGTTTATCGTGATAAATTTA
GTCGCAATGGTTGATTAAAT

Downstream 100 bases:

>100_bases
AATTTATGAAATTAACCAAATCACAACAAAAAGCTGTTAGTCAATTAGTTAATTGTTATTTAGAAAGCGTGAATAACAAT
AAAAAAGAAATTATTGATTT

Product: adenine specific DNA methyltransferase

Products: NA

Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFC
LSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKFEHRNKAYEDLSKEDKEKWNLKLDNKNYILVPFKKEPGKHL
VAKIFNDERKTTYSIIKLPFTFVSGIWTKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVL
ELNKEDGGNRTFTLITNNENQIGTNVCYERLYRINNGIGTKNEIDFDWVSKNKPYLNKLNVYDLKYFDTNPIEVDNSKIK
KVFAKMLVDFNNTSQSSLFENNQRELLINLSTLKPIEKKE

Sequences:

>Translated_360_residues
MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFC
LSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKFEHRNKAYEDLSKEDKEK*NLKLDNKNYILVPFKKEPGKHL
VAKIFNDERKTTYSIIKLPFTFVSGI*TKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVL
ELNKEDGGNRTFTLITNNENQIGTNVCYERLYRINNGIGTKNEIDFD*VSKNKPYLNKLNVYDLKYFDTNPIEVDNSKIK
KVFAKMLVDFNNTSQSSLFENNQRELLINLSTLKPIEKKE
>Mature_360_residues
MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNKLIYEGHEYILCYSKNNYNFC
LSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKFEHRNKAYEDLSKEDKEK*NLKLDNKNYILVPFKKEPGKHL
VAKIFNDERKTTYSIIKLPFTFVSGI*TKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVL
ELNKEDGGNRTFTLITNNENQIGTNVCYERLYRINNGIGTKNEIDFD*VSKNKPYLNKLNVYDLKYFDTNPIEVDNSKIK
KVFAKMLVDFNNTSQSSLFENNQRELLINLSTLKPIEKKE

Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002295
- InterPro:   IPR002941
- InterPro:   IPR002052 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 41365; Mature: 41365

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNK
CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
LIYEGHEYILCYSKNNYNFCLSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKF
HEECCCEEEEEEECCCCEEEECCCCCCEEEEEEEEECCCCEEEEECHHHHCCCCCCCCCH
EHRNKAYEDLSKEDKEKNLKLDNKNYILVPFKKEPGKHLVAKIFNDERKTTYSIIKLPFT
HHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECHH
FVSGITKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLEL
HHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEE
NKEDGGNRTFTLITNNENQIGTNVCYERLYRINNGIGTKNEIDFDVSKNKPYLNKLNVYD
ECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE
LKYFDTNPIEVDNSKIKKVFAKMLVDFNNTSQSSLFENNQRELLINLSTLKPIEKKE
EEEECCCCEEECHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEEHHCCCCCCCC
>Mature Secondary Structure
MMNERLKLAKNLLKNDGVIFVSIDDNEQAYLKVLMDEIFGEENFVTNFIWQKKSGGGLNK
CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
LIYEGHEYILCYSKNNYNFCLSEKNKKMSGFIKYKDKNNNSFFINSDIIRNNFGKKDNKF
HEECCCEEEEEEECCCCEEEECCCCCCEEEEEEEEECCCCEEEEECHHHHCCCCCCCCCH
EHRNKAYEDLSKEDKEKNLKLDNKNYILVPFKKEPGKHLVAKIFNDERKTTYSIIKLPFT
HHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECHH
FVSGITKDGNNEVDSLNIDFQNPKPIQLIMHLLDLHSNKNARVLDFFAGSGTTGHAVLEL
HHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEE
NKEDGGNRTFTLITNNENQIGTNVCYERLYRINNGIGTKNEIDFDVSKNKPYLNKLNVYD
ECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE
LKYFDTNPIEVDNSKIKKVFAKMLVDFNNTSQSSLFENNQRELLINLSTLKPIEKKE
EEEECCCCEEECHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEEHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387444; 11677609 [H]