Definition Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome.
Accession NC_002162
Length 751,719

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Identifier: 13358013

GI number: 13358013

Start: 510307

End: 511470

Strand: Reverse

Name: Not Available

Synonym: UU450

Alternate gene names: NA

Gene position: 511470-510307 (Counterclockwise)

Preceding gene: 13358014

Following gene: 13358012

Centisome position: 68.04

GC content: 21.82

Gene sequence:

>1164_bases
ATGGATAATAATATTAATGAAAAAACTAGTTTTTGAACGAAGAAGAATATTTGTTTTTTAATAATTGGTTTAATAGTTTG
TTTATTAATGATTATTATTTCAATTCTTTTTATTTTAGATATTGATTTTCAAAATTTATTTATAAAAATAAATCATAGTT
TAAAAACTATTAAATTAGCTATTTTATGATTGTTAATTCTTATTAGCTTTATTTTCTTTAGGGCTTTTATGTTTATAGTT
ATTGCAGTCATTGATACTTATAAAAACCAAATCAAAATTGCTTGATGGAAATGAATCCTTTATAGTTTTAGTTTAATTTT
TTTAAATGCTGTAACTCCTTTTTCTGTTGGAAGTGAACCTTTTTCAATTTATTTTTTAAATAAAAATGGTTATCATAATC
TAAAAAAAGTTTCTGCACTATTACTTGTTTCATCAACTTTTTATGAATTGGGCCAAGTTATAGTAACTGTACCATCTTTT
ATTTATATTAATTATGAATTAATAACTTATGCAGTTAATAATAAAACAAGTTTACCCTTTTATTATTATTTGGCTGTTGT
TGGTATAATTGCTGATTTATGTATGACAGCTATTTATTTTGTTTTAGGCTTCTCTAAAAAATTGCATTTTCGTTCAGTTT
TAATTTATAATTGAGTCAAAAAACTTTTTAAGCTTAAATATTTAACAAAAATTGAATTAATTCAAAAAAATAATCAAAAT
ATAAGTTTTAAAGCTTTTTATTTGTATTATTTTAAAACACTGCGGGTTTCATTATTGGCTTTTGTTATTGGAGTAGTCTA
TAACATTGGTATTTATGCACTAATGTATATTTCATATCGTTTAGTAGAACCAAAACCACATAACATCTTTTTTGATTTAT
TTAATTATACAAATATTGCTGTCACAGCAACTAATTTTGTCCCTTTGCCTGGATCTGAGGGTTCAATTCAATTTATGTTA
CGTGTTTTTTTAACAAATGATCAAAATCAAATTCGTTACGCAATGAATTGATTATCAACGCAAGATATAAATAATATTAT
TTTTATTTGAAGAATGTTTAGTATTTATTTAGGTAGTTTAATTGGGATGTTTGGGTTTGGTTATTTTTTAATTTTTGATT
TATATAAATTTATTAAAAAAGCTAAAGTTGATAAAAAAAGATAA

Upstream 100 bases:

>100_bases
AACAAATCATCAAAAAAGTAAAATTTTTAGAAGGGGGTGCCCTTCTTTTTTATTAGGAATAAAATTATATAATTAAATTA
CTAGAATAAGGATTTTTAAA

Downstream 100 bases:

>100_bases
GAATAATTAGTTTTAACTAATTCTTTATTGAGGTGGTTAAAATGAACTATTTAATTTTTAAAGTTATTTATGCAAATGCA
AATATTGTTGTTGGCGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MDNNINEKTSFWTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAILWLLILISFIFFRAFMFIV
IAVIDTYKNQIKIAWWKWILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF
IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNWVKKLFKLKYLTKIELIQKNNQN
ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML
RVFLTNDQNQIRYAMNWLSTQDINNIIFIWRMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR

Sequences:

>Translated_387_residues
MDNNINEKTSF*TKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAIL*LLILISFIFFRAFMFIV
IAVIDTYKNQIKIA*WK*ILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF
IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYN*VKKLFKLKYLTKIELIQKNNQN
ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML
RVFLTNDQNQIRYAMN*LSTQDINNIIFI*RMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR
>Mature_387_residues
MDNNINEKTSF*TKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAIL*LLILISFIFFRAFMFIV
IAVIDTYKNQIKIA*WK*ILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF
IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYN*VKKLFKLKYLTKIELIQKNNQN
ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML
RVFLTNDQNQIRYAMN*LSTQDINNIIFI*RMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR

Specific function: Unknown

COG id: COG0392

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022791 [H]

Pfam domain/function: PF03706 UPF0104 [H]

EC number: NA

Molecular weight: Translated: 44098; Mature: 44098

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNNINEKTSFTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
LLLILISFIFFRAFMFIVIAVIDTYKNQIKIAWKILYSFSLIFLNAVTPFSVGSEPFSIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
FLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSFIYINYELITYAVNNKTSLPFYYYL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHH
AVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNVKKLFKLKYLTKIELIQKNNQNISFKA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH
FYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCEEEEEEEE
FVPLPGSEGSIQFMLRVFLTNDQNQIRYAMNLSTQDINNIIFIRMFSIYLGSLIGMFGFG
EEECCCCCCCHHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLIFDLYKFIKKAKVDKKR
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDNNINEKTSFTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
LLLILISFIFFRAFMFIVIAVIDTYKNQIKIAWKILYSFSLIFLNAVTPFSVGSEPFSIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
FLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSFIYINYELITYAVNNKTSLPFYYYL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHH
AVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNVKKLFKLKYLTKIELIQKNNQNISFKA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH
FYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCEEEEEEEE
FVPLPGSEGSIQFMLRVFLTNDQNQIRYAMNLSTQDINNIIFIRMFSIYLGSLIGMFGFG
EEECCCCCCCHHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLIFDLYKFIKKAKVDKKR
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]