| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13358013
GI number: 13358013
Start: 510307
End: 511470
Strand: Reverse
Name: Not Available
Synonym: UU450
Alternate gene names: NA
Gene position: 511470-510307 (Counterclockwise)
Preceding gene: 13358014
Following gene: 13358012
Centisome position: 68.04
GC content: 21.82
Gene sequence:
>1164_bases ATGGATAATAATATTAATGAAAAAACTAGTTTTTGAACGAAGAAGAATATTTGTTTTTTAATAATTGGTTTAATAGTTTG TTTATTAATGATTATTATTTCAATTCTTTTTATTTTAGATATTGATTTTCAAAATTTATTTATAAAAATAAATCATAGTT TAAAAACTATTAAATTAGCTATTTTATGATTGTTAATTCTTATTAGCTTTATTTTCTTTAGGGCTTTTATGTTTATAGTT ATTGCAGTCATTGATACTTATAAAAACCAAATCAAAATTGCTTGATGGAAATGAATCCTTTATAGTTTTAGTTTAATTTT TTTAAATGCTGTAACTCCTTTTTCTGTTGGAAGTGAACCTTTTTCAATTTATTTTTTAAATAAAAATGGTTATCATAATC TAAAAAAAGTTTCTGCACTATTACTTGTTTCATCAACTTTTTATGAATTGGGCCAAGTTATAGTAACTGTACCATCTTTT ATTTATATTAATTATGAATTAATAACTTATGCAGTTAATAATAAAACAAGTTTACCCTTTTATTATTATTTGGCTGTTGT TGGTATAATTGCTGATTTATGTATGACAGCTATTTATTTTGTTTTAGGCTTCTCTAAAAAATTGCATTTTCGTTCAGTTT TAATTTATAATTGAGTCAAAAAACTTTTTAAGCTTAAATATTTAACAAAAATTGAATTAATTCAAAAAAATAATCAAAAT ATAAGTTTTAAAGCTTTTTATTTGTATTATTTTAAAACACTGCGGGTTTCATTATTGGCTTTTGTTATTGGAGTAGTCTA TAACATTGGTATTTATGCACTAATGTATATTTCATATCGTTTAGTAGAACCAAAACCACATAACATCTTTTTTGATTTAT TTAATTATACAAATATTGCTGTCACAGCAACTAATTTTGTCCCTTTGCCTGGATCTGAGGGTTCAATTCAATTTATGTTA CGTGTTTTTTTAACAAATGATCAAAATCAAATTCGTTACGCAATGAATTGATTATCAACGCAAGATATAAATAATATTAT TTTTATTTGAAGAATGTTTAGTATTTATTTAGGTAGTTTAATTGGGATGTTTGGGTTTGGTTATTTTTTAATTTTTGATT TATATAAATTTATTAAAAAAGCTAAAGTTGATAAAAAAAGATAA
Upstream 100 bases:
>100_bases AACAAATCATCAAAAAAGTAAAATTTTTAGAAGGGGGTGCCCTTCTTTTTTATTAGGAATAAAATTATATAATTAAATTA CTAGAATAAGGATTTTTAAA
Downstream 100 bases:
>100_bases GAATAATTAGTTTTAACTAATTCTTTATTGAGGTGGTTAAAATGAACTATTTAATTTTTAAAGTTATTTATGCAAATGCA AATATTGTTGTTGGCGAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MDNNINEKTSFWTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAILWLLILISFIFFRAFMFIV IAVIDTYKNQIKIAWWKWILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNWVKKLFKLKYLTKIELIQKNNQN ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML RVFLTNDQNQIRYAMNWLSTQDINNIIFIWRMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR
Sequences:
>Translated_387_residues MDNNINEKTSF*TKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAIL*LLILISFIFFRAFMFIV IAVIDTYKNQIKIA*WK*ILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYN*VKKLFKLKYLTKIELIQKNNQN ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML RVFLTNDQNQIRYAMN*LSTQDINNIIFI*RMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR >Mature_387_residues MDNNINEKTSF*TKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAIL*LLILISFIFFRAFMFIV IAVIDTYKNQIKIA*WK*ILYSFSLIFLNAVTPFSVGSEPFSIYFLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSF IYINYELITYAVNNKTSLPFYYYLAVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYN*VKKLFKLKYLTKIELIQKNNQN ISFKAFYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATNFVPLPGSEGSIQFML RVFLTNDQNQIRYAMN*LSTQDINNIIFI*RMFSIYLGSLIGMFGFGYFLIFDLYKFIKKAKVDKKR
Specific function: Unknown
COG id: COG0392
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022791 [H]
Pfam domain/function: PF03706 UPF0104 [H]
EC number: NA
Molecular weight: Translated: 44098; Mature: 44098
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNNINEKTSFTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAI CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH LLLILISFIFFRAFMFIVIAVIDTYKNQIKIAWKILYSFSLIFLNAVTPFSVGSEPFSIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE FLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSFIYINYELITYAVNNKTSLPFYYYL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHH AVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNVKKLFKLKYLTKIELIQKNNQNISFKA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH FYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCEEEEEEEE FVPLPGSEGSIQFMLRVFLTNDQNQIRYAMNLSTQDINNIIFIRMFSIYLGSLIGMFGFG EEECCCCCCCHHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH YFLIFDLYKFIKKAKVDKKR HHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDNNINEKTSFTKKNICFLIIGLIVCLLMIIISILFILDIDFQNLFIKINHSLKTIKLAI CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH LLLILISFIFFRAFMFIVIAVIDTYKNQIKIAWKILYSFSLIFLNAVTPFSVGSEPFSIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE FLNKNGYHNLKKVSALLLVSSTFYELGQVIVTVPSFIYINYELITYAVNNKTSLPFYYYL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCHHHHHH AVVGIIADLCMTAIYFVLGFSKKLHFRSVLIYNVKKLFKLKYLTKIELIQKNNQNISFKA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH FYLYYFKTLRVSLLAFVIGVVYNIGIYALMYISYRLVEPKPHNIFFDLFNYTNIAVTATN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCEEEEEEEE FVPLPGSEGSIQFMLRVFLTNDQNQIRYAMNLSTQDINNIIFIRMFSIYLGSLIGMFGFG EEECCCCCCCHHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH YFLIFDLYKFIKKAKVDKKR HHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7569993 [H]