Definition Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome.
Accession NC_002162
Length 751,719

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Identifier: 13358004

GI number: 13358004

Start: 501760

End: 503112

Strand: Reverse

Name: Not Available

Synonym: UU441

Alternate gene names: NA

Gene position: 503112-501760 (Counterclockwise)

Preceding gene: 13358005

Following gene: 13358003

Centisome position: 66.93

GC content: 22.25

Gene sequence:

>1353_bases
ATGATCGTGAAAATTGAGAAAGTCCATCTTTATTCACTAGATATTAATGCAAAGGATGAAACATCAGAAAATAGTCATAT
TAAAATTTGAAAAGAGTTAGATTGATTAATACAAAATGACGTAAAAATTATTAACCATAGTTATGGATGAAGTCCAAATG
ATTTTTTAAATATTGGTTTTTATAATTTTATTAATGGTAAAGAAATAAACGATGATAAAGATTTTAAAAGAGAGTTAAAA
AAATATATAGATACATTGAATAAGGATGATATTGTTAATAATACTATTAATAAATATAAATTTAAAAATTATATTTATGA
TTTCATATCATATTATTTTGATATTATAAATATTTTTTCAGCTGGAAATTCTTATAATGATGAAATACGATATAGAAATA
AAAATGGACATATTTTAGAAATTAATTGATTTGATATATCTAAATATAGTTTTATGGATAGATTTAATCAAAATTCAATA
TATGTAGGATCTACTAATAAAAATAATGAAAAAGTAAGTAATTTTTCAGATCGACATCACTTGAATGATGTTAAAAATAA
ATATGGAGATTTATTGATGCCATTTTTAGTTGCTCCTGGAGAAGGTATTTATGACACTTCAATAATTACAAAGTTTATTA
AAAATAAAGGAGATAAAAATATAAATCTAGGTACTAGTTTTTCTGCGCCTATTGTCACTGGTGCGATTAGTTTATTGCAA
TCTTATTATATGGTTAATAACGCTAATAAAACAATTCCACTAACACATATTCGCTCAATTTTAGCTGCTTCATCAATTCC
TTTAAAAAATAATGAAAATTATGATTTTTATAAAAATAGTTTTAGTCATTTATATGGTGCTGGTCATTTAGATTTTAAAA
GAGCAATAGAAGCATATAAAAACGCAAAACAAACAAAAATTTTAACGAAACACAAAGATAAACAACTAGTTAAAGAAATG
GATATAAGTATTGATAATGATCAAACTAATTTCAATTTTGCTTTATCATGATTATTTAAGCCAACATCAAATAGTTTTTC
AAAAAAACATGATTATAATAGTGTATACAACGAATATAAAAAACTAACATATTTTAAAAATGACAATTATGATATCTATT
TAGTTAAAAATGAAGATCTAAAAAATATTGATTATCAAAATTTTGATAACTTTGGCGAAATTTTAAGAACTATAAACATT
TATCGTTCAGAATCAGATTCGAATGTTGAATTAATTAGAGCACCAAATCTAAATAAAGGCGAATACAAAATTTTAGTTTA
TCAAAAAGGAGAAGTAAGAAATGAACAAACGTCATTTAGTTACACATTCATTAAAGAAAAAGCTATTCATTAA

Upstream 100 bases:

>100_bases
CAAGAAGAAAGTACTTCACAAAGTTTAACTTTATCATTAAATCCTAATTTTAATAATATAAATAAAGATGAATCAATTGA
AATAAAGTTAATGAATTTAA

Downstream 100 bases:

>100_bases
AACTAGCTTATTATCATTATTTTTAATTGCACCTTTGATTATTGGTTGTACAACTAATAAATCAAAATCCAATAATTCTA
ATAAATTGTCAAAGCAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MIVKIEKVHLYSLDINAKDETSENSHIKIWKELDWLIQNDVKIINHSYGWSPNDFLNIGFYNFINGKEINDDKDFKRELK
KYIDTLNKDDIVNNTINKYKFKNYIYDFISYYFDIINIFSAGNSYNDEIRYRNKNGHILEINWFDISKYSFMDRFNQNSI
YVGSTNKNNEKVSNFSDRHHLNDVKNKYGDLLMPFLVAPGEGIYDTSIITKFIKNKGDKNINLGTSFSAPIVTGAISLLQ
SYYMVNNANKTIPLTHIRSILAASSIPLKNNENYDFYKNSFSHLYGAGHLDFKRAIEAYKNAKQTKILTKHKDKQLVKEM
DISIDNDQTNFNFALSWLFKPTSNSFSKKHDYNSVYNEYKKLTYFKNDNYDIYLVKNEDLKNIDYQNFDNFGEILRTINI
YRSESDSNVELIRAPNLNKGEYKILVYQKGEVRNEQTSFSYTFIKEKAIH

Sequences:

>Translated_450_residues
MIVKIEKVHLYSLDINAKDETSENSHIKI*KELD*LIQNDVKIINHSYG*SPNDFLNIGFYNFINGKEINDDKDFKRELK
KYIDTLNKDDIVNNTINKYKFKNYIYDFISYYFDIINIFSAGNSYNDEIRYRNKNGHILEIN*FDISKYSFMDRFNQNSI
YVGSTNKNNEKVSNFSDRHHLNDVKNKYGDLLMPFLVAPGEGIYDTSIITKFIKNKGDKNINLGTSFSAPIVTGAISLLQ
SYYMVNNANKTIPLTHIRSILAASSIPLKNNENYDFYKNSFSHLYGAGHLDFKRAIEAYKNAKQTKILTKHKDKQLVKEM
DISIDNDQTNFNFALS*LFKPTSNSFSKKHDYNSVYNEYKKLTYFKNDNYDIYLVKNEDLKNIDYQNFDNFGEILRTINI
YRSESDSNVELIRAPNLNKGEYKILVYQKGEVRNEQTSFSYTFIKEKAIH
>Mature_450_residues
MIVKIEKVHLYSLDINAKDETSENSHIKI*KELD*LIQNDVKIINHSYG*SPNDFLNIGFYNFINGKEINDDKDFKRELK
KYIDTLNKDDIVNNTINKYKFKNYIYDFISYYFDIINIFSAGNSYNDEIRYRNKNGHILEIN*FDISKYSFMDRFNQNSI
YVGSTNKNNEKVSNFSDRHHLNDVKNKYGDLLMPFLVAPGEGIYDTSIITKFIKNKGDKNINLGTSFSAPIVTGAISLLQ
SYYMVNNANKTIPLTHIRSILAASSIPLKNNENYDFYKNSFSHLYGAGHLDFKRAIEAYKNAKQTKILTKHKDKQLVKEM
DISIDNDQTNFNFALS*LFKPTSNSFSKKHDYNSVYNEYKKLTYFKNDNYDIYLVKNEDLKNIDYQNFDNFGEILRTINI
YRSESDSNVELIRAPNLNKGEYKILVYQKGEVRNEQTSFSYTFIKEKAIH

Specific function: Unknown

COG id: COG1404

COG function: function code O; Subtilisin-like serine proteases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51927; Mature: 51927

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00138 SUBTILASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKIEKVHLYSLDINAKDETSENSHIKIKELDLIQNDVKIINHSYGSPNDFLNIGFYNF
CEEEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHEECCCCCCCCEEEECEEEC
INGKEINDDKDFKRELKKYIDTLNKDDIVNNTINKYKFKNYIYDFISYYFDIINIFSAGN
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYNDEIRYRNKNGHILEINFDISKYSFMDRFNQNSIYVGSTNKNNEKVSNFSDRHHLNDV
CCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEECCCCCCCHHHCCHHHHHHHHH
KNKYGDLLMPFLVAPGEGIYDTSIITKFIKNKGDKNINLGTSFSAPIVTGAISLLQSYYM
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VNNANKTIPLTHIRSILAASSIPLKNNENYDFYKNSFSHLYGAGHLDFKRAIEAYKNAKQ
CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHH
TKILTKHKDKQLVKEMDISIDNDQTNFNFALSLFKPTSNSFSKKHDYNSVYNEYKKLTYF
HHHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHHHHHEEEE
KNDNYDIYLVKNEDLKNIDYQNFDNFGEILRTINIYRSESDSNVELIRAPNLNKGEYKIL
ECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEE
VYQKGEVRNEQTSFSYTFIKEKAIH
EEECCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MIVKIEKVHLYSLDINAKDETSENSHIKIKELDLIQNDVKIINHSYGSPNDFLNIGFYNF
CEEEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHEECCCCCCCCEEEECEEEC
INGKEINDDKDFKRELKKYIDTLNKDDIVNNTINKYKFKNYIYDFISYYFDIINIFSAGN
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYNDEIRYRNKNGHILEINFDISKYSFMDRFNQNSIYVGSTNKNNEKVSNFSDRHHLNDV
CCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEECCCCCCCHHHCCHHHHHHHHH
KNKYGDLLMPFLVAPGEGIYDTSIITKFIKNKGDKNINLGTSFSAPIVTGAISLLQSYYM
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VNNANKTIPLTHIRSILAASSIPLKNNENYDFYKNSFSHLYGAGHLDFKRAIEAYKNAKQ
CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHH
TKILTKHKDKQLVKEMDISIDNDQTNFNFALSLFKPTSNSFSKKHDYNSVYNEYKKLTYF
HHHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHHHHHEEEE
KNDNYDIYLVKNEDLKNIDYQNFDNFGEILRTINIYRSESDSNVELIRAPNLNKGEYKIL
ECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEE
VYQKGEVRNEQTSFSYTFIKEKAIH
EEECCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA