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The map label for this gene is hlyA

Identifier: 13357999

GI number: 13357999

Start: 497710

End: 498453

Strand: Direct

Name: hlyA

Synonym: UU436

Alternate gene names: 13357999

Gene position: 497710-498453 (Clockwise)

Preceding gene: 13357998

Following gene: 13358000

Centisome position: 66.21

GC content: 24.06

Gene sequence:

>744_bases
ATGAATCAAAGGTTAGATCATTATCTGAAAAACACTAATCAATGTGAAACACGATCCAAAGCAATTGATTTGATAAAACG
TGGACGTGTGTTTGTTAATAATTTTCAAGTATTAAAACCCTCATTTTTAGTTAAACAGACTGATTCTGTAGAAATTAAAA
ATGATGAAATGTATTTCGTTTCTAAAGGTGGATATAAGCTTTTAAAAATTATTAAAGAAATTAATTTAATAATTAAAAAT
TTTGTTATAGCTGATTTAGGGAGCTCAACAGGAGGTTTTACTGATTGTTGTTTACAATTGGGTGCTAAAAAAATTTACGC
AATCGATGTTGGTGTTGACTTATTACACCCTAGTTTAAAGAAAAGTTATAAAATTATTAATTATGAAAAAACTAATGTTA
AAAATTTAGATAAATCTTATTTTTTAGAAGATTTAGATTTAATTGTTGGTGATTTATCTTTCATTTCTTTAGAGCAAATT
TTTCCAATAATTAAAAAAATTTCATCCCCTAAAACTTTGCTTTTATTGTTGATAAAACCCCAGTTTGAATTAGGAAAGGA
CGTAGCTAGTAAATATAAAGGTCTAATTCAAAATCAAAAATTACAACAATTAGCAATAAACAAAATAATCAATTTAGCAA
AAAATTATGACTTTGAATGTAAACATTTAACTCCTACTGATATTTTTGATGAAAAAAAACAAAATCAAGAATATATGATA
TTTTTACAAAAGCATGAAAAATAA

Upstream 100 bases:

>100_bases
GATAAAACAAAAAAATAAATCAAAATTAAAATAAAAACCGCATTGAAGTGGTTTTTATTTTATTATTAATTAATAATTTA
TAAAAAAGGTAAGCTTATAA

Downstream 100 bases:

>100_bases
TCATCAAAAAATCATCATGCATCTTGATATCGATGCTTTTTATGCTACTGTTAGTGAACTATTACATCCTGAATATAAAA
ATTTTCCAATTGCTGTTGGT

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNQRLDHYLKNTNQCETRSKAIDLIKRGRVFVNNFQVLKPSFLVKQTDSVEIKNDEMYFVSKGGYKLLKIIKEINLIIKN
FVIADLGSSTGGFTDCCLQLGAKKIYAIDVGVDLLHPSLKKSYKIINYEKTNVKNLDKSYFLEDLDLIVGDLSFISLEQI
FPIIKKISSPKTLLLLLIKPQFELGKDVASKYKGLIQNQKLQQLAINKIINLAKNYDFECKHLTPTDIFDEKKQNQEYMI
FLQKHEK

Sequences:

>Translated_247_residues
MNQRLDHYLKNTNQCETRSKAIDLIKRGRVFVNNFQVLKPSFLVKQTDSVEIKNDEMYFVSKGGYKLLKIIKEINLIIKN
FVIADLGSSTGGFTDCCLQLGAKKIYAIDVGVDLLHPSLKKSYKIINYEKTNVKNLDKSYFLEDLDLIVGDLSFISLEQI
FPIIKKISSPKTLLLLLIKPQFELGKDVASKYKGLIQNQKLQQLAINKIINLAKNYDFECKHLTPTDIFDEKKQNQEYMI
FLQKHEK
>Mature_247_residues
MNQRLDHYLKNTNQCETRSKAIDLIKRGRVFVNNFQVLKPSFLVKQTDSVEIKNDEMYFVSKGGYKLLKIIKEINLIIKN
FVIADLGSSTGGFTDCCLQLGAKKIYAIDVGVDLLHPSLKKSYKIINYEKTNVKNLDKSYFLEDLDLIVGDLSFISLEQI
FPIIKKISSPKTLLLLLIKPQFELGKDVASKYKGLIQNQKLQQLAINKIINLAKNYDFECKHLTPTDIFDEKKQNQEYMI
FLQKHEK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28501; Mature: 28501

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRLDHYLKNTNQCETRSKAIDLIKRGRVFVNNFQVLKPSFLVKQTDSVEIKNDEMYFV
CCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCEEEECCHHEEECCCCEEEECCCEEEE
SKGGYKLLKIIKEINLIIKNFVIADLGSSTGGFTDCCLQLGAKKIYAIDVGVDLLHPSLK
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHCHHHH
KSYKIINYEKTNVKNLDKSYFLEDLDLIVGDLSFISLEQIFPIIKKISSPKTLLLLLIKP
HCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
QFELGKDVASKYKGLIQNQKLQQLAINKIINLAKNYDFECKHLTPTDIFDEKKQNQEYMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCEEEE
FLQKHEK
EEEECCC
>Mature Secondary Structure
MNQRLDHYLKNTNQCETRSKAIDLIKRGRVFVNNFQVLKPSFLVKQTDSVEIKNDEMYFV
CCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCEEEECCHHEEECCCCEEEECCCEEEE
SKGGYKLLKIIKEINLIIKNFVIADLGSSTGGFTDCCLQLGAKKIYAIDVGVDLLHPSLK
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHCHHHH
KSYKIINYEKTNVKNLDKSYFLEDLDLIVGDLSFISLEQIFPIIKKISSPKTLLLLLIKP
HCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
QFELGKDVASKYKGLIQNQKLQQLAINKIINLAKNYDFECKHLTPTDIFDEKKQNQEYMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCEEEE
FLQKHEK
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]