Click here to switch to the map view.

The map label for this gene is rnhB

Identifier: 13357958

GI number: 13357958

Start: 456919

End: 457869

Strand: Reverse

Name: rnhB

Synonym: UU397

Alternate gene names: 13357958

Gene position: 457869-456919 (Counterclockwise)

Preceding gene: 13357960

Following gene: 13357957

Centisome position: 60.91

GC content: 24.5

Gene sequence:

>951_bases
ATGGCAATTGTTTCTGTTAAATTAACATCTAATCAAGTTGATAAATTCTTAATTCTATGAAGACCATATTTAGTACATAA
CAACCATAATTATGCTAAATATACTTTTAAGATCGATGGTACTTTAATCATTATTTACAATACTAACACATGTACTATTA
ATACTCATGATATAAATTCTTTTTTAAACACATTTTTAAAAAGAGAAGATTTAACACTATTTAATGTTATAAAACAACAA
GTAAACACTAAAAAAAATAATCAAAATGTTATGAGCCAATCAGAAATTTATGAAAGTGCCCAAGTAATTATTGGGTCTGA
TGAGGTTGGAGTTGGCGATTTATTTGGAGGTATAGTTGTTTGCGCAGTGAGTTTAAAAAAAAGTGATTTTAAAAAAATAA
ATCATTTAAAAATCATAGATTCTAAAAAACTCAATGATCAGCAAATGCAAGAAATATATCAACAAATTAAAAATCAGATT
TCATATACAATTGTTTCTTATAATCCTAAAGAATACAATGAATTAATTAAAGAATACAATAATGCACATATTCTTAAAAC
TATTTTACATTATAAAGCATTACAAAGTGAAATTCACAAACACGCTAAATATTCAATTTTTAGTGTTGTTGATGCTTTTA
GTTCATTAAAAAACTGAAATCAATATTTACAAAAAGTCAATTTTCAACCTTATGAACCAAACTTATTAATCCCTAAAGCC
GAATCAATTTATACAAGTGTAGCTTTGGCGTCAATAATTGCACGTGTTATGTTTTTAAAAATGATTGCAATTATTGAAGA
ACAATTTAACGTTAAAATCCCGTTAGGAAGTTCAAATCCTTTAGTTAATGACGTCGCTAGTAATATTTTTCAAAAATTTG
GCTTAAAAATTTTAAAACAAGTCGCTAAAGAACACTTTAGTAACTTTCAACAAATTATTAAAAATAAATAA

Upstream 100 bases:

>100_bases
TAATCGAACTCCTAGTATTAAACTAATTTAATTAATTATAAACAATATAAATACGTTTAAACTTATAATTTTATTATAAG
ACATTAATAAAAGGTTTTTT

Downstream 100 bases:

>100_bases
AATCTTCTTTTTTAACTAATTCTTTTAATGTAAGAAAGGAATTAACAATATGCAAAAAATATCTGATAATTTTAAAAAAG
TTTATTATGGTGGTTTTTCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAIVSVKLTSNQVDKFLILWRPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSFLNTFLKREDLTLFNVIKQQ
VNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI
SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWNQYLQKVNFQPYEPNLLIPKA
ESIYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVAKEHFSNFQQIIKNK

Sequences:

>Translated_316_residues
MAIVSVKLTSNQVDKFLIL*RPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSFLNTFLKREDLTLFNVIKQQ
VNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI
SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKN*NQYLQKVNFQPYEPNLLIPKA
ESIYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVAKEHFSNFQQIIKNK
>Mature_315_residues
AIVSVKLTSNQVDKFLIL*RPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSFLNTFLKREDLTLFNVIKQQV
NTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQIS
YTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKN*NQYLQKVNFQPYEPNLLIPKAE
SIYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVAKEHFSNFQQIIKNK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 36010; Mature: 35879

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVSVKLTSNQVDKFLILRPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSF
CEEEEEEECCCCCCCEEEEECEEEECCCCEEEEEEEECCEEEEEEECCEEEEEHHHHHHH
LNTFLKREDLTLFNVIKQQVNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVC
HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
AVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISYTIVSYNPKEYNELIKEYNN
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHCC
AHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNNQYLQKVNFQPYEPNLLIPKAES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCHHH
IYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KEHFSNFQQIIKNK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
AIVSVKLTSNQVDKFLILRPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSF
EEEEEEECCCCCCCEEEEECEEEECCCCEEEEEEEECCEEEEEEECCEEEEEHHHHHHH
LNTFLKREDLTLFNVIKQQVNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVC
HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
AVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISYTIVSYNPKEYNELIKEYNN
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHCC
AHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNNQYLQKVNFQPYEPNLLIPKAES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCHHH
IYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KEHFSNFQQIIKNK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA