| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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The map label for this gene is lon
Identifier: 13357908
GI number: 13357908
Start: 395023
End: 397398
Strand: Direct
Name: lon
Synonym: UU348
Alternate gene names: 13357908
Gene position: 395023-397398 (Clockwise)
Preceding gene: 13357907
Following gene: 13357909
Centisome position: 52.55
GC content: 28.96
Gene sequence:
>2376_bases ATGAAAAAACCTATCTTAATATCACGAGCAATTGTTGTTTTACCTTATGAAACAACAACAATTGAAGTAGGACGCCCTAA ATCAATCCAAGCGATTGATTTAGCTAAACAATCTTCAAGTAAAGAAATTATTATTATTTCACAAAAAGATATTGATACTG ATGAAGTTGTTAATTTTGATGAATTGTATAAAGTAGGAACGTTAGTTAAAATTAAATCTATTATTGATAATTTTGATGAA GGTTATTCAATTGAAGTTGAAGGATTAAAAGCTGTTTACATTAATAATGAGAATGATGTTATTGATGCTATTGAATATGA ATATGAAGATGTCATTACAAACCCTATTTTATCAAATAAAGATGAAATAGCAATCAATGGTATTAATTCTGAAATTTTCA ATATAATTAACAAGCGTTCAAGACATAAAAATATCAATTTTGATAATATGCACGCTTTAATTTCACTTGAAAAAGAAAAG TTTGCTTATTTAGCTGCGGCAACTTATATTAATGATTATGATAATGAAATTAGTGAAAAAACTATTGAAGATCGAATTAA TATCTTATTGCAACCTAATTTATTATTAGTTCATGAGACAATTTTACATTTATTATTTGATCAATTAGTAGATAAGCGCG TTATTGAAGATGAAGTTGAAAAAACTATTACTGATAAAATTAATAATAATTTTCAAAAACAACAACGTGAGTTCTATTTA CGCGAAAAATTAAAAGTTGTTAAAGAACAATTAGGTGAACTAAGTAGTCGTGAAGAAGACGCTGATAAAATTCGTGCAAA AATTGAAGATTTAGAATTACCACCAAATGTTAAAGAACGTGCTTTAGCTGAATTAAATCGTTTTGAGAATGCTATGTCAT CAAATGAATCATCAGTTATTAAATCATATCTTGATTGATTATTGGATTTACCATGAACTCAACAGGGTGTTGATAATACT GATTTGATGTCTGTAAGAACTCATTTAGATGATAATCACTATGGTATTGAAAAGGTAAAAGAAAGAATTTTAGAGTATTT AGCATTACGTATGCGTAACCCTAATCTTAAAGGTCCAATCATTTGTTTAGTTGGCCCTCCAGGTGTTGGTAAAACATCAC TTGTTACTTCGATTGCACAAGCTTTAAATAAAAAATTTGTTAAAGTTAGTTTAGGTGGTGTGCGAGATGAATCTGAAATT CGAGGTCATCGTAAAACTTATGTTGGAGCTATGCCCGGACGTATTATTAAGGGTATGAAAAAGGCTGGCGTTATCAATCC TTTATTCCTATTAGATGAAATTGATAAAATGACATCTGATCAACGAGGAGATCCTGCTGCCGCAATGCTTGAAGTATTAG ATCCTGAACAAAATAAAAATTTTTCAGATAATTACATTGAAGAAGAATATGATTTGAGCAAAGTGATGTTTATGGCAACA GCTAATTATTATCAACAAATTCCTTATGCTTTGATTGATCGTTTAGAAGTAATTGAACTATCGAGTTATACAGCAATTGA AAAACGTGAAATAGCAAAATCACATCTATTAAAAAGAATTTTTATGGATGCTAAATTAAATGAAAATGAACTTATTTTTA CTGATGATGCTTTAGATTTTATTATTAATCATTATACTAAAGAAGCTGGAGTACGAGAATTAGATCGTCAATTAGGTCAT ATTGTACGCAAGTACATTGTTGAAACTTATAAGAATAAAAATAATCAATCACCTTTGAATTTAAAAGTTGATGAAGCCAT GATTATTAAATATTTAGGTAAAATTAAGTTTGATTTTAATAAAAAAGAAGAGACAACAATTCCAGGAATTGTTAATGGAA TGGCTTATACAGCGGCTGGTGGCGATTTATTGCCTATTGAAGTTAATCATTCAACCAATGGAAAAGGTGGAAATGTAACT ATTACTGGAAATCTTGAAAAAACAATGAATGAATCTGTATCTGTTGCTTTAGGTTTTGTTAAAGCAAATGCAGATAAATA TGGCATTGATACTAAAAAAGTTTCTTTTAAAGAAATTGATATTCATGTTCATGTTCCAAGCGGAGGAATTCCTAAAGATG GACCGTCTGCTGGAATTGCGATTACAACAGCAATTATTAGTTCATTAAGTCAAAGACCAGTGCGTACAACACTATCAATG ACAGGAGAAATTATGCTACGTGGTAATGTTGGAATTATTGGTGGTGTTAAAGAAAAAGTTATTTCAGCATATCGTGCTGG AGTTCGTGAAATTATTTTACCAATTGATGACGAACGTTACTTAGAAGATGTTCCAAAGTATATATTAGATGATATTAAAA TTCATTTGGTAAAACACTATGATGAAGTTTATAATATTGTTTTTGGAGAAAAATAA
Upstream 100 bases:
>100_bases ATCAATGTATAAAATTAGCACTCGTAATAATAGTTTGCTAATTTTTATTTGTTTTTGTTATAATATCTTAATACAATAAA GATTAGAAAAGAGGTTGTTA
Downstream 100 bases:
>100_bases GAAATATTAAAAAATAAACACTGAAGTGTTTATTTTTTAATTATGTTATAATTAAAATTAAAATATGAGCGATGAGGATA TTTAGATGTCAACAAAACAA
Product: ATP-dependent protease
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MKKPILISRAIVVLPYETTTIEVGRPKSIQAIDLAKQSSSKEIIIISQKDIDTDEVVNFDELYKVGTLVKIKSIIDNFDE GYSIEVEGLKAVYINNENDVIDAIEYEYEDVITNPILSNKDEIAINGINSEIFNIINKRSRHKNINFDNMHALISLEKEK FAYLAAATYINDYDNEISEKTIEDRINILLQPNLLLVHETILHLLFDQLVDKRVIEDEVEKTITDKINNNFQKQQREFYL REKLKVVKEQLGELSSREEDADKIRAKIEDLELPPNVKERALAELNRFENAMSSNESSVIKSYLDWLLDLPWTQQGVDNT DLMSVRTHLDDNHYGIEKVKERILEYLALRMRNPNLKGPIICLVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEI RGHRKTYVGAMPGRIIKGMKKAGVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVMFMAT ANYYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDDALDFIINHYTKEAGVRELDRQLGH IVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIKFDFNKKEETTIPGIVNGMAYTAAGGDLLPIEVNHSTNGKGGNVT ITGNLEKTMNESVSVALGFVKANADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSM TGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDEVYNIVFGEK
Sequences:
>Translated_791_residues MKKPILISRAIVVLPYETTTIEVGRPKSIQAIDLAKQSSSKEIIIISQKDIDTDEVVNFDELYKVGTLVKIKSIIDNFDE GYSIEVEGLKAVYINNENDVIDAIEYEYEDVITNPILSNKDEIAINGINSEIFNIINKRSRHKNINFDNMHALISLEKEK FAYLAAATYINDYDNEISEKTIEDRINILLQPNLLLVHETILHLLFDQLVDKRVIEDEVEKTITDKINNNFQKQQREFYL REKLKVVKEQLGELSSREEDADKIRAKIEDLELPPNVKERALAELNRFENAMSSNESSVIKSYLD*LLDLP*TQQGVDNT DLMSVRTHLDDNHYGIEKVKERILEYLALRMRNPNLKGPIICLVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEI RGHRKTYVGAMPGRIIKGMKKAGVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVMFMAT ANYYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDDALDFIINHYTKEAGVRELDRQLGH IVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIKFDFNKKEETTIPGIVNGMAYTAAGGDLLPIEVNHSTNGKGGNVT ITGNLEKTMNESVSVALGFVKANADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSM TGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDEVYNIVFGEK >Mature_791_residues MKKPILISRAIVVLPYETTTIEVGRPKSIQAIDLAKQSSSKEIIIISQKDIDTDEVVNFDELYKVGTLVKIKSIIDNFDE GYSIEVEGLKAVYINNENDVIDAIEYEYEDVITNPILSNKDEIAINGINSEIFNIINKRSRHKNINFDNMHALISLEKEK FAYLAAATYINDYDNEISEKTIEDRINILLQPNLLLVHETILHLLFDQLVDKRVIEDEVEKTITDKINNNFQKQQREFYL REKLKVVKEQLGELSSREEDADKIRAKIEDLELPPNVKERALAELNRFENAMSSNESSVIKSYLD*LLDLP*TQQGVDNT DLMSVRTHLDDNHYGIEKVKERILEYLALRMRNPNLKGPIICLVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEI RGHRKTYVGAMPGRIIKGMKKAGVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVMFMAT ANYYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDDALDFIINHYTKEAGVRELDRQLGH IVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIKFDFNKKEETTIPGIVNGMAYTAAGGDLLPIEVNHSTNGKGGNVT ITGNLEKTMNESVSVALGFVKANADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSM TGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDEVYNIVFGEK
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=562, Percent_Identity=40.2135231316726, Blast_Score=427, Evalue=1e-119, Organism=Homo sapiens, GI21396489, Length=592, Percent_Identity=38.6824324324324, Blast_Score=418, Evalue=1e-116, Organism=Escherichia coli, GI1786643, Length=791, Percent_Identity=40.4551201011378, Blast_Score=539, Evalue=1e-154, Organism=Caenorhabditis elegans, GI17505831, Length=609, Percent_Identity=38.752052545156, Blast_Score=410, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17556486, Length=516, Percent_Identity=40.8914728682171, Blast_Score=384, Evalue=1e-106, Organism=Saccharomyces cerevisiae, GI6319449, Length=638, Percent_Identity=35.423197492163, Blast_Score=383, Evalue=1e-107, Organism=Drosophila melanogaster, GI221513036, Length=585, Percent_Identity=40.1709401709402, Blast_Score=437, Evalue=1e-122, Organism=Drosophila melanogaster, GI24666867, Length=585, Percent_Identity=40.1709401709402, Blast_Score=437, Evalue=1e-122,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 89119; Mature: 89119
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKPILISRAIVVLPYETTTIEVGRPKSIQAIDLAKQSSSKEIIIISQKDIDTDEVVNFD CCCCEEEECEEEEEECCCEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHCCHH ELYKVGTLVKIKSIIDNFDEGYSIEVEGLKAVYINNENDVIDAIEYEYEDVITNPILSNK HHHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCC DEIAINGINSEIFNIINKRSRHKNINFDNMHALISLEKEKFAYLAAATYINDYDNEISEK CCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH TIEDRINILLQPNLLLVHETILHLLFDQLVDKRVIEDEVEKTITDKINNNFQKQQREFYL HHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH REKLKVVKEQLGELSSREEDADKIRAKIEDLELPPNVKERALAELNRFENAMSSNESSVI HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH KSYLDLLDLPTQQGVDNTDLMSVRTHLDDNHYGIEKVKERILEYLALRMRNPNLKGPIIC HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE LVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEIRGHRKTYVGAMPGRIIKGMKKA EECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHEECCCCHHHHHHHHHC GVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVMFMATAN CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH YYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDDALDFII HHHHCCHHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHH NHYTKEAGVRELDRQLGHIVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIKFDFNKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCEEECCCCC EETTIPGIVNGMAYTAAGGDLLPIEVNHSTNGKGGNVTITGNLEKTMNESVSVALGFVKA CCCCCCHHHCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCHHHHHCCCCEEEEEEEEE NADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSMTG CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC EIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDE EEEEECCCEEECCHHHHHHHHHHHCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH VYNIVFGEK HHHHHCCCC >Mature Secondary Structure MKKPILISRAIVVLPYETTTIEVGRPKSIQAIDLAKQSSSKEIIIISQKDIDTDEVVNFD CCCCEEEECEEEEEECCCEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHCCHH ELYKVGTLVKIKSIIDNFDEGYSIEVEGLKAVYINNENDVIDAIEYEYEDVITNPILSNK HHHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCC DEIAINGINSEIFNIINKRSRHKNINFDNMHALISLEKEKFAYLAAATYINDYDNEISEK CCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH TIEDRINILLQPNLLLVHETILHLLFDQLVDKRVIEDEVEKTITDKINNNFQKQQREFYL HHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH REKLKVVKEQLGELSSREEDADKIRAKIEDLELPPNVKERALAELNRFENAMSSNESSVI HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH KSYLDLLDLPTQQGVDNTDLMSVRTHLDDNHYGIEKVKERILEYLALRMRNPNLKGPIIC HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE LVGPPGVGKTSLVTSIAQALNKKFVKVSLGGVRDESEIRGHRKTYVGAMPGRIIKGMKKA EECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHEECCCCHHHHHHHHHC GVINPLFLLDEIDKMTSDQRGDPAAAMLEVLDPEQNKNFSDNYIEEEYDLSKVMFMATAN CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH YYQQIPYALIDRLEVIELSSYTAIEKREIAKSHLLKRIFMDAKLNENELIFTDDALDFII HHHHCCHHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHH NHYTKEAGVRELDRQLGHIVRKYIVETYKNKNNQSPLNLKVDEAMIIKYLGKIKFDFNKK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCEEECCCCC EETTIPGIVNGMAYTAAGGDLLPIEVNHSTNGKGGNVTITGNLEKTMNESVSVALGFVKA CCCCCCHHHCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCHHHHHCCCCEEEEEEEEE NADKYGIDTKKVSFKEIDIHVHVPSGGIPKDGPSAGIAITTAIISSLSQRPVRTTLSMTG CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCC EIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDERYLEDVPKYILDDIKIHLVKHYDE EEEEECCCEEECCHHHHHHHHHHHCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH VYNIVFGEK HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA