Definition Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome.
Accession NC_002162
Length 751,719

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Identifier: 13357868

GI number: 13357868

Start: 352983

End: 354128

Strand: Reverse

Name: Not Available

Synonym: UU308

Alternate gene names: NA

Gene position: 354128-352983 (Counterclockwise)

Preceding gene: 13357870

Following gene: 13357867

Centisome position: 47.11

GC content: 17.89

Gene sequence:

>1146_bases
ATGGATATAGTAATTAAGAAAAATTGTAATTTTGTTAAAAATGATGACCATTTATATTCTTTTTATACACCACTAATTGG
TATGCAAGCAGTAGCTTTATATTCTTGATTCGTTAATAGAGAAAATATTTTTAATAAAAAGGGTACAATTAATTTAACTC
ATGAATATTTATTAGATGAACTTAATATTTCAATTAATACATACAACGAATTAATTACTAAATTAATTAATGTTGATTTA
ATTAAAATTTATTCTTTTGAAAATAATTCCCAACAAGTAATTGAAGTTTTTCGACCATTAAAATTTAGCGAATTTATAAA
TATTGAAAAATTTAATGAAGAATTAAAAAATAATGTTTCATTAAATCATTATAATGTTTTAAATTTATTAAATAAAGAGA
ATAATATTGATACTAATCGTTTAATTGATTTATCAGCTCAATTTAAGACAAATCATTTTAACAATCTCGAAAATAAATTA
GATAAAATTAAAAAAATAATTTTAAAAGAATATGGATTATCACTTCAAATTGATGAATCAACAAAGTTGTGCTTAATAAA
TTTTTTCAAAAAATATAAATTTAGTATTGATCAAATGTTAAATTTAATCAAAAATAATTTAATTAATAATATTGATTTTT
TAACAATTGATTTAAATAAATTAGAATTAACAATTTTTTCAAATATGGAATTCGAAAAAAATAAAACAAAATTTCAATAT
TACAATATTGAACGTGATTTTAATATTTTTAATAAAAACAGTAATTTAGATCGATTCAAAAATGTAATTAATGATTATAA
TAATTTTAAACCTTCAGATTTTTTAAAACATATTCGTAAAGAAAAATTAAGTTTAAAAGATAAAGAGGCTATCAATTTAT
TAACGTATGACAAATCATTAAGTGATCCAATTGTTAATGTTATCTTAGATTTTGTTTTATTTAAAAATTTAGGGCGTTTA
AATGTAAAATATTTAAAACGTATTAAAGAAACAGTACTGGGAATCAATATTAAAGATGAGTATGAAATGATTAAATTTTT
TCAAAATAAAAAGAATGATCATAAAGAATTAATTTGTGAAGATAGTGATAATGCTAATACTTTCAAAAATACTAATTTTA
TTGAAGTAAAATTTGGAGATTTATAA

Upstream 100 bases:

>100_bases
TCAAATAAATAAATTGACAATTAAATTAAATAAAAGCATCTAAAATATTGATTAATGAAAAATAGATTTGATTAAAATTC
AAAGGGAATATGTAAGGTTT

Downstream 100 bases:

>100_bases
AAATGAACAATAATCAAGTTGATGATGAATTAGATTTAGAGAATTTTAATTATCAAAAAGCATTAGAAATTCCGAATATT
AAAGCAATTAATTTAACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDIVIKKNCNFVKNDDHLYSFYTPLIGMQAVALYSWFVNRENIFNKKGTINLTHEYLLDELNISINTYNELITKLINVDL
IKIYSFENNSQQVIEVFRPLKFSEFINIEKFNEELKNNVSLNHYNVLNLLNKENNIDTNRLIDLSAQFKTNHFNNLENKL
DKIKKIILKEYGLSLQIDESTKLCLINFFKKYKFSIDQMLNLIKNNLINNIDFLTIDLNKLELTIFSNMEFEKNKTKFQY
YNIERDFNIFNKNSNLDRFKNVINDYNNFKPSDFLKHIRKEKLSLKDKEAINLLTYDKSLSDPIVNVILDFVLFKNLGRL
NVKYLKRIKETVLGINIKDEYEMIKFFQNKKNDHKELICEDSDNANTFKNTNFIEVKFGDL

Sequences:

>Translated_381_residues
MDIVIKKNCNFVKNDDHLYSFYTPLIGMQAVALYS*FVNRENIFNKKGTINLTHEYLLDELNISINTYNELITKLINVDL
IKIYSFENNSQQVIEVFRPLKFSEFINIEKFNEELKNNVSLNHYNVLNLLNKENNIDTNRLIDLSAQFKTNHFNNLENKL
DKIKKIILKEYGLSLQIDESTKLCLINFFKKYKFSIDQMLNLIKNNLINNIDFLTIDLNKLELTIFSNMEFEKNKTKFQY
YNIERDFNIFNKNSNLDRFKNVINDYNNFKPSDFLKHIRKEKLSLKDKEAINLLTYDKSLSDPIVNVILDFVLFKNLGRL
NVKYLKRIKETVLGINIKDEYEMIKFFQNKKNDHKELICEDSDNANTFKNTNFIEVKFGDL
>Mature_381_residues
MDIVIKKNCNFVKNDDHLYSFYTPLIGMQAVALYS*FVNRENIFNKKGTINLTHEYLLDELNISINTYNELITKLINVDL
IKIYSFENNSQQVIEVFRPLKFSEFINIEKFNEELKNNVSLNHYNVLNLLNKENNIDTNRLIDLSAQFKTNHFNNLENKL
DKIKKIILKEYGLSLQIDESTKLCLINFFKKYKFSIDQMLNLIKNNLINNIDFLTIDLNKLELTIFSNMEFEKNKTKFQY
YNIERDFNIFNKNSNLDRFKNVINDYNNFKPSDFLKHIRKEKLSLKDKEAINLLTYDKSLSDPIVNVILDFVLFKNLGRL
NVKYLKRIKETVLGINIKDEYEMIKFFQNKKNDHKELICEDSDNANTFKNTNFIEVKFGDL

Specific function: Unknown

COG id: COG3611

COG function: function code L; Replication initiation/membrane attachment protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45162; Mature: 45162

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVIKKNCNFVKNDDHLYSFYTPLIGMQAVALYSFVNRENIFNKKGTINLTHEYLLDEL
CCEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
NISINTYNELITKLINVDLIKIYSFENNSQQVIEVFRPLKFSEFINIEKFNEELKNNVSL
CCEEEHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
NHYNVLNLLNKENNIDTNRLIDLSAQFKTNHFNNLENKLDKIKKIILKEYGLSLQIDEST
CHHHHHHHHCCCCCCCCCCEEEEECHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
KLCLINFFKKYKFSIDQMLNLIKNNLINNIDFLTIDLNKLELTIFSNMEFEKNKTKFQYY
CHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEECEEEEEEEECCEECCCCCEEEEE
NIERDFNIFNKNSNLDRFKNVINDYNNFKPSDFLKHIRKEKLSLKDKEAINLLTYDKSLS
EECCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCCC
DPIVNVILDFVLFKNLGRLNVKYLKRIKETVLGINIKDEYEMIKFFQNKKNDHKELICED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHEEECC
SDNANTFKNTNFIEVKFGDL
CCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MDIVIKKNCNFVKNDDHLYSFYTPLIGMQAVALYSFVNRENIFNKKGTINLTHEYLLDEL
CCEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
NISINTYNELITKLINVDLIKIYSFENNSQQVIEVFRPLKFSEFINIEKFNEELKNNVSL
CCEEEHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
NHYNVLNLLNKENNIDTNRLIDLSAQFKTNHFNNLENKLDKIKKIILKEYGLSLQIDEST
CHHHHHHHHCCCCCCCCCCEEEEECHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
KLCLINFFKKYKFSIDQMLNLIKNNLINNIDFLTIDLNKLELTIFSNMEFEKNKTKFQYY
CHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEECEEEEEEEECCEECCCCCEEEEE
NIERDFNIFNKNSNLDRFKNVINDYNNFKPSDFLKHIRKEKLSLKDKEAINLLTYDKSLS
EECCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCCC
DPIVNVILDFVLFKNLGRLNVKYLKRIKETVLGINIKDEYEMIKFFQNKKNDHKELICED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHEEECC
SDNANTFKNTNFIEVKFGDL
CCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA