Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126699213
Identifier: 126699213
GI number: 126699213
Start: 1862040
End: 1863239
Strand: Direct
Name: 126699213
Synonym: CD1609
Alternate gene names: NA
Gene position: 1862040-1863239 (Clockwise)
Preceding gene: 126699212
Following gene: 126699214
Centisome position: 43.4
GC content: 22.75
Gene sequence:
>1200_bases ATGAAATTAAAATCTAAAATATCTATATTTATTATATTTTTGACTTTAGCAATATATTTTAGTATAGGTTTATTAAATAA TGAAGATAATTTAAAGATAAAAACTATAAAAGGTGACTCTAATGAATTAGACCATATAAACATAAATTTTGGATATGCTT TGAATGGATATATAAATTCATATTATACAATAAATGGAAGCAACAAAACCAAAAAGACTGAATTAATAAAACTACAAAAG GATAGTAAGAACACAAATAATTTAATTGATGTATCTAGTGGTTCAGATTTAATTGCTCATGTTGGATTTGAAATGAATGA GGAGTCAAAAGATATAAACTTTGTGATAGATGAGAAAAAAGAAGATTTAGAAAAAGGTGTATTTCCATCAGAAGGTAGTG ATAAAGAAATTGAATATGAAAAATTAGATATGAATAATTTTACAAGGACAAGATATAAAGTAGATAAAAGTACAGATGAT TATTATGCAAAGATACTAGCATCAAAAAGATATAAAAAATACTTATATGTATCTGTACTTTATGCTACAAGTGATTCATC AGAAAATAACAAAGAATATTCAAGTACTATAGATATAATAAAAATTAATCCAGAAAATAAAAAAATCAAGACTATAAAAA GTATAAATTTAAGTAATTATTTTTCCGAAAAATACCAAAACATAGAGAACATAGGTGTAAGTTATGCTAGCAAATATGAG GATAAGATGTATATTTTAGTAAATGTACTAAATACAAACATAGGTGATAATAGTAATTCTAAATTTCATTTACTTGAGTA TAATCTTGAAGAAAATAAGGAAAGCATAATGGAATTAAAAACTGATAGCAAAATGGCTTTAGCAAAAGCAAAGTTAGAAG CTAATAAATTATATATGGTAATGTCGAATGATTATGATAATAGTTCAATTACAGAGTTAAATTTACTTACCTATAATATA TTAGATAAAAGCTTAGATGAAGATAAATATGTTTTAGATAATAGAGAAAAAAGAGGAATTAGAAGTATTGAAATTGATTC AAATAAAATCGTTGCATATACATCAAGGCTAAACTCTATATTATCTTGGGATGATAAATTTATGCTATATATAATAAATA AAAATTCTAAGGAAATTGTATATGAAGGAGAATTACAATTTAACAGTTCAAATAGTATGTTAGAATTTGAAATAAAGTAG
Upstream 100 bases:
>100_bases TAGTAGCAGGGTTATTAAGTTTTTTAATTATAATGTTTATTCTAAATGGAATATCTTATTTGCTAATTAAAAAGAAAGTA TCTCTTTAAGGAGGGGTGGT
Downstream 100 bases:
>100_bases GTGAGTTGATGAAAGATTTAATAAGATTATTCGAATTTGAATTAAAAAGAAATATAAAGAATTATATATTTATAATAATT TGTTGTTGTTCTTTTGTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MKLKSKISIFIIFLTLAIYFSIGLLNNEDNLKIKTIKGDSNELDHININFGYALNGYINSYYTINGSNKTKKTELIKLQK DSKNTNNLIDVSSGSDLIAHVGFEMNEESKDINFVIDEKKEDLEKGVFPSEGSDKEIEYEKLDMNNFTRTRYKVDKSTDD YYAKILASKRYKKYLYVSVLYATSDSSENNKEYSSTIDIIKINPENKKIKTIKSINLSNYFSEKYQNIENIGVSYASKYE DKMYILVNVLNTNIGDNSNSKFHLLEYNLEENKESIMELKTDSKMALAKAKLEANKLYMVMSNDYDNSSITELNLLTYNI LDKSLDEDKYVLDNREKRGIRSIEIDSNKIVAYTSRLNSILSWDDKFMLYIINKNSKEIVYEGELQFNSSNSMLEFEIK
Sequences:
>Translated_399_residues MKLKSKISIFIIFLTLAIYFSIGLLNNEDNLKIKTIKGDSNELDHININFGYALNGYINSYYTINGSNKTKKTELIKLQK DSKNTNNLIDVSSGSDLIAHVGFEMNEESKDINFVIDEKKEDLEKGVFPSEGSDKEIEYEKLDMNNFTRTRYKVDKSTDD YYAKILASKRYKKYLYVSVLYATSDSSENNKEYSSTIDIIKINPENKKIKTIKSINLSNYFSEKYQNIENIGVSYASKYE DKMYILVNVLNTNIGDNSNSKFHLLEYNLEENKESIMELKTDSKMALAKAKLEANKLYMVMSNDYDNSSITELNLLTYNI LDKSLDEDKYVLDNREKRGIRSIEIDSNKIVAYTSRLNSILSWDDKFMLYIINKNSKEIVYEGELQFNSSNSMLEFEIK >Mature_399_residues MKLKSKISIFIIFLTLAIYFSIGLLNNEDNLKIKTIKGDSNELDHININFGYALNGYINSYYTINGSNKTKKTELIKLQK DSKNTNNLIDVSSGSDLIAHVGFEMNEESKDINFVIDEKKEDLEKGVFPSEGSDKEIEYEKLDMNNFTRTRYKVDKSTDD YYAKILASKRYKKYLYVSVLYATSDSSENNKEYSSTIDIIKINPENKKIKTIKSINLSNYFSEKYQNIENIGVSYASKYE DKMYILVNVLNTNIGDNSNSKFHLLEYNLEENKESIMELKTDSKMALAKAKLEANKLYMVMSNDYDNSSITELNLLTYNI LDKSLDEDKYVLDNREKRGIRSIEIDSNKIVAYTSRLNSILSWDDKFMLYIINKNSKEIVYEGELQFNSSNSMLEFEIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46203; Mature: 46203
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKSKISIFIIFLTLAIYFSIGLLNNEDNLKIKTIKGDSNELDHININFGYALNGYINS CCCCHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEECEEEE YYTINGSNKTKKTELIKLQKDSKNTNNLIDVSSGSDLIAHVGFEMNEESKDINFVIDEKK EEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCEEEEECCCH EDLEKGVFPSEGSDKEIEYEKLDMNNFTRTRYKVDKSTDDYYAKILASKRYKKYLYVSVL HHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEE YATSDSSENNKEYSSTIDIIKINPENKKIKTIKSINLSNYFSEKYQNIENIGVSYASKYE EEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHCCC DKMYILVNVLNTNIGDNSNSKFHLLEYNLEENKESIMELKTDSKMALAKAKLEANKLYMV CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHEECCCCHHHHHHHEECCCEEEEE MSNDYDNSSITELNLLTYNILDKSLDEDKYVLDNREKRGIRSIEIDSNKIVAYTSRLNSI EECCCCCCCEEEEEEEEEEHHHCCCCCCCEEECCCCCCCCEEEEECCCEEEEEEHHHHHH LSWDDKFMLYIINKNSKEIVYEGELQFNSSNSMLEFEIK HCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEC >Mature Secondary Structure MKLKSKISIFIIFLTLAIYFSIGLLNNEDNLKIKTIKGDSNELDHININFGYALNGYINS CCCCHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEECEEEE YYTINGSNKTKKTELIKLQKDSKNTNNLIDVSSGSDLIAHVGFEMNEESKDINFVIDEKK EEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCEEEEECCCH EDLEKGVFPSEGSDKEIEYEKLDMNNFTRTRYKVDKSTDDYYAKILASKRYKKYLYVSVL HHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEE YATSDSSENNKEYSSTIDIIKINPENKKIKTIKSINLSNYFSEKYQNIENIGVSYASKYE EEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHCCC DKMYILVNVLNTNIGDNSNSKFHLLEYNLEENKESIMELKTDSKMALAKAKLEANKLYMV CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHEECCCCHHHHHHHEECCCEEEEE MSNDYDNSSITELNLLTYNILDKSLDEDKYVLDNREKRGIRSIEIDSNKIVAYTSRLNSI EECCCCCCCEEEEEEEEEEHHHCCCCCCCEEECCCCCCCCEEEEECCCEEEEEEHHHHHH LSWDDKFMLYIINKNSKEIVYEGELQFNSSNSMLEFEIK HCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA