Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
---|---|
Accession | NC_009091 |
Length | 1,641,879 |
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The map label for this gene is trxA [H]
Identifier: 126696505
GI number: 126696505
Start: 976904
End: 977227
Strand: Reverse
Name: trxA [H]
Synonym: P9301_11671
Alternate gene names: 126696505
Gene position: 977227-976904 (Counterclockwise)
Preceding gene: 126696506
Following gene: 126696504
Centisome position: 59.52
GC content: 38.27
Gene sequence:
>324_bases ATGTCATCAGCTCCAGCCGTAACTGATTCTTCATTTGACAAGGATGTACTGCAAAGTGATCTACCAGTATTGGTTGATTT TTGGGCACCATGGTGCGGTCCATGTAGGATGGTTGCACCAGTTGTAGAAGAAATCTCAAAAGACTTTGAAGGGAAAATTA AAGTTTTTAAATTAAACACTGATGAGAATCCAAATGTTGCCAGTCAATACGGAATTAGAAGTATTCCTACTTTAATGATC TTTAAAGGAGGTCAAAAGGTTGATACCGTTGTTGGTGCTGTGCCAAAAGCAACTCTCTCGAGCACTTTAACTAAGCATTT ATAA
Upstream 100 bases:
>100_bases CTTTTTTTAGATATTTTGTTACTTATATTATTTTATCTGTAATGAAATCATCACTTAAAAGAATTGCCTGCTAAATTTTC AAAAAAGGAATACTTAAATT
Downstream 100 bases:
>100_bases ATTTAAAAGCTTTGCATAAAATTGGACTAATAGACTATGGGATGGGTAATATTCATTCTGTAACAAAATCTCTAGAAAGT CTTGGAGAAGAAATCATATT
Product: thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MSSAPAVTDSSFDKDVLQSDLPVLVDFWAPWCGPCRMVAPVVEEISKDFEGKIKVFKLNTDENPNVASQYGIRSIPTLMI FKGGQKVDTVVGAVPKATLSSTLTKHL
Sequences:
>Translated_107_residues MSSAPAVTDSSFDKDVLQSDLPVLVDFWAPWCGPCRMVAPVVEEISKDFEGKIKVFKLNTDENPNVASQYGIRSIPTLMI FKGGQKVDTVVGAVPKATLSSTLTKHL >Mature_106_residues SSAPAVTDSSFDKDVLQSDLPVLVDFWAPWCGPCRMVAPVVEEISKDFEGKIKVFKLNTDENPNVASQYGIRSIPTLMIF KGGQKVDTVVGAVPKATLSSTLTKHL
Specific function: Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI5031973, Length=83, Percent_Identity=40.9638554216867, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI21361403, Length=94, Percent_Identity=35.1063829787234, Blast_Score=73, Evalue=5e-14, Organism=Homo sapiens, GI42794771, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI224493972, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI87082331, Length=101, Percent_Identity=53.4653465346535, Blast_Score=125, Evalue=4e-31, Organism=Escherichia coli, GI1788936, Length=100, Percent_Identity=52, Blast_Score=116, Evalue=3e-28, Organism=Escherichia coli, GI87081747, Length=86, Percent_Identity=33.7209302325581, Blast_Score=68, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646193, Length=88, Percent_Identity=38.6363636363636, Blast_Score=79, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17507705, Length=75, Percent_Identity=38.6666666666667, Blast_Score=71, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71998175, Length=99, Percent_Identity=35.3535353535354, Blast_Score=71, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17556044, Length=78, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115532378, Length=74, Percent_Identity=37.8378378378378, Blast_Score=68, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17510299, Length=84, Percent_Identity=38.0952380952381, Blast_Score=68, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17509965, Length=72, Percent_Identity=38.8888888888889, Blast_Score=68, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115532380, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17544108, Length=74, Percent_Identity=37.8378378378378, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71980565, Length=86, Percent_Identity=31.3953488372093, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71980562, Length=86, Percent_Identity=31.3953488372093, Blast_Score=62, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323072, Length=90, Percent_Identity=44.4444444444444, Blast_Score=84, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6321648, Length=88, Percent_Identity=42.0454545454545, Blast_Score=83, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6319925, Length=96, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324862, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=3e-12, Organism=Drosophila melanogaster, GI24639826, Length=91, Percent_Identity=35.1648351648352, Blast_Score=83, Evalue=4e-17, Organism=Drosophila melanogaster, GI28573567, Length=98, Percent_Identity=34.6938775510204, Blast_Score=79, Evalue=8e-16, Organism=Drosophila melanogaster, GI24664269, Length=99, Percent_Identity=39.3939393939394, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI19921434, Length=83, Percent_Identity=37.3493975903614, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI17648013, Length=74, Percent_Identity=41.8918918918919, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583090, Length=74, Percent_Identity=41.8918918918919, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI21358065, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11611; Mature: 11480
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAPAVTDSSFDKDVLQSDLPVLVDFWAPWCGPCRMVAPVVEEISKDFEGKIKVFKLNT CCCCCCCCCCCCCHHHHHCCCCEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC DENPNVASQYGIRSIPTLMIFKGGQKVDTVVGAVPKATLSSTLTKHL CCCCCHHHHCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure SSAPAVTDSSFDKDVLQSDLPVLVDFWAPWCGPCRMVAPVVEEISKDFEGKIKVFKLNT CCCCCCCCCCCCHHHHHCCCCEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC DENPNVASQYGIRSIPTLMIFKGGQKVDTVVGAVPKATLSSTLTKHL CCCCCHHHHCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8756494; 8590279; 8905231; 9298645 [H]