Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
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Accession | NC_009091 |
Length | 1,641,879 |
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The map label for this gene is thrS
Identifier: 126695961
GI number: 126695961
Start: 550624
End: 552540
Strand: Reverse
Name: thrS
Synonym: P9301_06231
Alternate gene names: 126695961
Gene position: 552540-550624 (Counterclockwise)
Preceding gene: 126695962
Following gene: 126695960
Centisome position: 33.65
GC content: 31.51
Gene sequence:
>1917_bases ATGCCAATAATTACCTTGCCTGATGGTTCAAAGAAGGTTTTCGAAAAATCTGTAACTATTTTAGAAATTGCCCAGAGTAT AGGCGCTGGATTAGCTAAAGCAACAATTGCTGGAAGAGTAAATGATGTTCTTCTTGATGCAACAATTCCTATAAATAAAG ATTCCAAAGTTGTAATCATCACATCAAAAGATAAAGAAGGAATTGAAATAATAAGGCATTCTTTCGCTCACCTTATTGGT CATGCAGTTAAACAAATTTACTCTGATATAAAAATGGCGATTGGGCCTGTAATCGAAGATGGTTTTTATTACGATATTTT CTCTGAATACAGATTTACTCCTGAAGATTTAATAAAAATCGAAAATAGAATTAATAAATTAATAAAAACAAACTATGACG TTGAAATTTTACAAGTTTCTAAAGAAGAGGCAATTAAAACTTTTAAAGAAAGAGATGAGACTTTTAAATTAAGAATAATT GAAGAAATTCCTGAAGAAGGTCTCATCAATTTATACAAGCACGAAGAATACATCGACATGTGTAGAGGGCCTCACGTTCC TAACACTAGACATTTGAGACACTTTAAATTACTTAAATTATCAGGTTCATATTGGAGAGGTAATAGTGAGAATGAATCAT TACAGAGAATATATGGAACTGCATGGGCAAAAGAAAAAGAACTCAAAGATTATTTAACAAGAATTGAAGAAGCGGAAAAA AGAGATCACAGAAAACTTGGTAAAAAACATTCACTATTTCACATACAAGAAGAATCTCCAGGAATGATTTTTTGGCATCC AAATGGATGGACAATCTACCAAGTACTTGAAAAGTACATAAGAGAAATACTCAAAAAAAATGATTATTTAGAAATCAAAA CCCCACAAGCTGTTGATAAATCTCTTTGGGAAAAATCCGGTCATTGGGAGAAATTTAGAGACGATATGTTCACTACTGCA TCAGAAAATCGAACATATGCGATTAAACCAATGAATTGTCCATGCCATATTCAAGTATTTAATCAAGGTTTAAAAAGTTA TAAAGATTTACCAATTCGTCTTGCTGAATTTGGTTCTTGTCACAGAAACGAGCCCTCAGGTGCACTACATGGTTTGATGA GAGTAAGAAACTTTACTCAAGATGATGCACACATATTCTGTACAGAAGAGCAAATTCAAGAAGAGGTATCTACCTTCATA GATCTTGTTTTCGAAGTTTATAAAACTTTTGGTTTTGATGAAATCATTATAAAATTATCAACACGTCCTGAAAAAAGGGT AGGTAGTGAAGATATTTGGGATAAATCAGAAGAGGCTCTTACTAAAGCGCTCGATAATAAGAATCTTAAATGGGAACTAC AACCTGGAGAAGGTGCTTTTTATGGTCCAAAAATAGAATTCTCGTTAAAGGATTGTCTTAGTAGAGTTTGGCAATGCGGA ACTATCCAGGTTGATTTCTCAATGCCTATTAGATTAGATGCAACTTATGTAGATATAGACAATGAAAAAAGAAATCCAGT TATGCTGCATAGAGCAATTTTAGGATCCTTTGAAAGATTTATAGGAATCTTAATTGAACAATATGAGGCAAAATTCCCAA TTTGGCTTGCGCCATATCAAATAATTTTGTTAAGCATTACTGATAGAAATATTGAAAAATGTTTAAAGTTTAATGAATTA ATAAATAATAATGGTTATAGATCAAAAGTTGATATTAGGAATGAAAAAATAGGATATAAAATACGAGAGGCAACTCTTGG CAGAGTTCCTTTAATTGCAGTTATTGGTGATAAAGAAGAGGAAATTGATTCAGTCGCCTTAAGAGCTTTGAATGGAAAAA ATTTAGGAATTTTCAATTTACCAAATCTTTTCAAATTAATGGATGAATTAATAGAAAAAAAAGGGAGAACAGAATAA
Upstream 100 bases:
>100_bases AATCCTTAATGAAGGGAAGGAAAAAGCTGAAGATTTAGCGAATCAGACTTTAAAAAGAGTTAAATCAAAATTGGGATTTT TTGAAATGGAGAAATAAATT
Downstream 100 bases:
>100_bases TTTCTTATATATGAATTTTCTTGCTTGTGATTTAGGAGGTACAAAGGTTCTATTAGGAATTTTCAAAAAAGAAATAAATA ATAATCCGCCTAAGTTAATA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS
Number of amino acids: Translated: 638; Mature: 637
Protein sequence:
>638_residues MPIITLPDGSKKVFEKSVTILEIAQSIGAGLAKATIAGRVNDVLLDATIPINKDSKVVIITSKDKEGIEIIRHSFAHLIG HAVKQIYSDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKERDETFKLRII EEIPEEGLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGSYWRGNSENESLQRIYGTAWAKEKELKDYLTRIEEAEK RDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTA SENRTYAIKPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQEEVSTFI DLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFSLKDCLSRVWQCG TIQVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSITDRNIEKCLKFNEL INNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVALRALNGKNLGIFNLPNLFKLMDELIEKKGRTE
Sequences:
>Translated_638_residues MPIITLPDGSKKVFEKSVTILEIAQSIGAGLAKATIAGRVNDVLLDATIPINKDSKVVIITSKDKEGIEIIRHSFAHLIG HAVKQIYSDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKERDETFKLRII EEIPEEGLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGSYWRGNSENESLQRIYGTAWAKEKELKDYLTRIEEAEK RDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTA SENRTYAIKPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQEEVSTFI DLVFEVYKTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFSLKDCLSRVWQCG TIQVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSITDRNIEKCLKFNEL INNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVALRALNGKNLGIFNLPNLFKLMDELIEKKGRTE >Mature_637_residues PIITLPDGSKKVFEKSVTILEIAQSIGAGLAKATIAGRVNDVLLDATIPINKDSKVVIITSKDKEGIEIIRHSFAHLIGH AVKQIYSDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKERDETFKLRIIE EIPEEGLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGSYWRGNSENESLQRIYGTAWAKEKELKDYLTRIEEAEKR DHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFTTAS ENRTYAIKPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQEEVSTFID LVFEVYKTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFSLKDCLSRVWQCGT IQVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSITDRNIEKCLKFNELI NNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVALRALNGKNLGIFNLPNLFKLMDELIEKKGRTE
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI38570111, Length=602, Percent_Identity=41.0299003322259, Blast_Score=475, Evalue=1e-134, Organism=Homo sapiens, GI38202255, Length=637, Percent_Identity=39.403453689168, Blast_Score=474, Evalue=1e-133, Organism=Homo sapiens, GI20070344, Length=648, Percent_Identity=35.6481481481481, Blast_Score=409, Evalue=1e-114, Organism=Escherichia coli, GI1788013, Length=635, Percent_Identity=57.9527559055118, Blast_Score=800, Evalue=0.0, Organism=Escherichia coli, GI1786392, Length=161, Percent_Identity=24.8447204968944, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71984192, Length=648, Percent_Identity=40.1234567901235, Blast_Score=483, Evalue=1e-136, Organism=Caenorhabditis elegans, GI71984184, Length=648, Percent_Identity=40.1234567901235, Blast_Score=483, Evalue=1e-136, Organism=Saccharomyces cerevisiae, GI6322112, Length=625, Percent_Identity=37.12, Blast_Score=431, Evalue=1e-121, Organism=Saccharomyces cerevisiae, GI6322654, Length=393, Percent_Identity=38.4223918575064, Blast_Score=298, Evalue=2e-81, Organism=Drosophila melanogaster, GI24583839, Length=639, Percent_Identity=38.3411580594679, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI24583842, Length=639, Percent_Identity=38.3411580594679, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI28574141, Length=639, Percent_Identity=38.3411580594679, Blast_Score=468, Evalue=1e-132,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYT_PROM0 (A3PBX1)
Other databases:
- EMBL: CP000576 - RefSeq: YP_001090847.1 - ProteinModelPortal: A3PBX1 - SMR: A3PBX1 - STRING: A3PBX1 - GeneID: 4911129 - GenomeReviews: CP000576_GR - KEGG: pmg:P9301_06231 - eggNOG: COG0441 - HOGENOM: HBG352811 - OMA: GFEYEVE - ProtClustDB: PRK00413 - BioCyc: PMAR167546:P9301ORF_0638-MONOMER - GO: GO:0005737 - HAMAP: MF_00184_B - InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 - Gene3D: G3DSA:3.40.50.800 - Gene3D: G3DSA:3.10.20.30 - PRINTS: PR01047 - SMART: SM00863 - TIGRFAMs: TIGR00418
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD; SSF52954 Anticodon_bd; SSF81271 TGS-like; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.3
Molecular weight: Translated: 74056; Mature: 73925
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIITLPDGSKKVFEKSVTILEIAQSIGAGLAKATIAGRVNDVLLDATIPINKDSKVVII CCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEE TSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKI ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCHHHHHHH ENRINKLIKTNYDVEILQVSKEEAIKTFKERDETFKLRIIEEIPEEGLINLYKHEEYIDM HHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHHHH CRGPHVPNTRHLRHFKLLKLSGSYWRGNSENESLQRIYGTAWAKEKELKDYLTRIEEAEK HCCCCCCCCCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDK HHHHHCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH SLWEKSGHWEKFRDDMFTTASENRTYAIKPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSC HHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCEEHHHHCCC HRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLS CCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC TRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFSLKDCLSRVWQCG CCCCHHCCCCHHCCCHHHHHHHHHCCCCCEEEEECCCCCEECCEEEEEHHHHHHHHHCCC TIQVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQ EEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEE IILLSITDRNIEKCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEE EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEECCCHH EIDSVALRALNGKNLGIFNLPNLFKLMDELIEKKGRTE HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure PIITLPDGSKKVFEKSVTILEIAQSIGAGLAKATIAGRVNDVLLDATIPINKDSKVVII CEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEE TSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKI ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCHHHHHHH ENRINKLIKTNYDVEILQVSKEEAIKTFKERDETFKLRIIEEIPEEGLINLYKHEEYIDM HHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHHHH CRGPHVPNTRHLRHFKLLKLSGSYWRGNSENESLQRIYGTAWAKEKELKDYLTRIEEAEK HCCCCCCCCCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDHRKLGKKHSLFHIQEESPGMIFWHPNGWTIYQVLEKYIREILKKNDYLEIKTPQAVDK HHHHHCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH SLWEKSGHWEKFRDDMFTTASENRTYAIKPMNCPCHIQVFNQGLKSYKDLPIRLAEFGSC HHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCEEHHHHCCC HRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQEEVSTFIDLVFEVYKTFGFDEIIIKLS CCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC TRPEKRVGSEDIWDKSEEALTKALDNKNLKWELQPGEGAFYGPKIEFSLKDCLSRVWQCG CCCCHHCCCCHHCCCHHHHHHHHHCCCCCEEEEECCCCCEECCEEEEEHHHHHHHHHCCC TIQVDFSMPIRLDATYVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQ EEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEE IILLSITDRNIEKCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEE EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEECCCHH EIDSVALRALNGKNLGIFNLPNLFKLMDELIEKKGRTE HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA