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The map label for this gene is ydcR [H]

Identifier: 126447925

GI number: 126447925

Start: 1013783

End: 1015201

Strand: Direct

Name: ydcR [H]

Synonym: BMA10247_A1073

Alternate gene names: 126447925

Gene position: 1013783-1015201 (Clockwise)

Preceding gene: 126447038

Following gene: 126447756

Centisome position: 43.09

GC content: 69.7

Gene sequence:

>1419_bases
GTGAAGCGCTACGAACAACTGGCGGACGACATCGAGGCGATGATCCGGCGCGGCGTCTACCGGCCGGGCGAGCGGATACC
GTCGGTGCGGCAGGCGAGCGTGCAGCACCGGCTCAGCATCACGACCGTCGTGCGCGCGTACCTGGTGCTCGAGAGCCGCG
GCGCGATCGAGAGCCGGCCGCAGTCCGGCTATTTCGTGCGCGCGCGGCAGGATGCGCCGGCGCTCGCGCTGCATGCGTCG
GCGCCCGTCGCGGTGTCGTCGGCCGTCGACGTGAGCCGGCTCGTGCTGTCGACGCTGCGCTCGATCGCGCGCGACGACGC
GGTGCCGCTCGGCTCGCCGTATCCGGACGCGACGCCGTTCCCCGCGCAGCGCATCGCGCGGCACGCGCACGCTATCGCGC
GGCGGCGCGCGCGCTGGGGCGTGATCGACGATCTGCCGCCGGGCAATCCGGAGCTGATCCGGCAGATCGCGCGCCGCTAT
CTGGAAGGCGGCGTCGCGGTCGATCCGGGCGAGATCGTCGTGACGATCGGCGCGACCGAGGCGATCAATTTGTGCCTGCA
GGCGGTGGCCAAGCCGGGCGACACGATCGCCGTCGAATCGCCGACGTTCTACGCGATGCTGCACGCGATCGAGCGGCTCG
GGATGCGTGCGATCGAAGTCGCGACGCACCCGGGCGAGGGCATCGATATCGACGCGCTCGCGCGGATTCTCGCGACCGAG
CGCATTGCCGCGTGCATGGTGATGCCCAATTTCCAGAACCCGCTCGGCTTCCTGATGCCGGACGAGCGCAAGCGCGCGCT
CGTCGAGCTGCTCGCGCGGCACGACGTGCCGGCGATCGAGAACGACGTCTACCACGAGCTGTACTACGGCGCCGCGCGGC
CGAGCACGCTCAAGGCGTTCGATGCGCGCGGGCTCGTGCTGCACTGCGCGTCGTTCTCGAAAAGCCTGTCGCCCGCGTAC
CGGGTCGGCTGGGCGATGCCGGGGCGTTACCGCGATCAGGTCGAAAAGCTCAAGTTCCTGAACACCCTCGCGACGCCCGC
GATCGACCAGCTCGCGATCGCCGAGTATCTGCGGCACGACGGCTACGATCACCATCTGCGGCGGATTCGCAAGCTCTATG
CGCAGCAGGCGAGCATGATGGCGGCGCTCGTGCGGCGTTTCTTTCCGGACGGCACGCGGCTGTCGCAGCCGAAGGGCGGC
TACGTGCTATGGATCGAGCTGCCGGACGGCGTCGACGCGATGGCGCTCTACCGGCTCGCGCTCGCGCAGAAGATCACGCT
CGGGCCGGGGCACATGTTCTCGACGACGCTCGCGTATCGGCACTGCATCCGGCTGAACTACAGCTATGCGTGGTCGCCGC
AGATCGAGGCGGCGGTGAAGACGCTCGGGCGGCTGGCCGCGGTGTGCGCGAAACGATGA

Upstream 100 bases:

>100_bases
CACCTTGCCGGAAAGAAAAAGAGCACAGTTCTTGGTTATGGTGCGATGCGTCAATAAACTGTACTCTTGCATATCGACAA
ACGGACCGGCGGGGCGGGCA

Downstream 100 bases:

>100_bases
GGGCGGGGGGATGAAGACGAACGCGGCGAAAGACGGGCGCGATGCATGCGGCGCATGGCGCGAGGACGATGTGCATGCGC
CGTGGGCGTGCGATGCGCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS
APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY
LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE
RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY
RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG
YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR

Sequences:

>Translated_472_residues
MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS
APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY
LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE
RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY
RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG
YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR
>Mature_472_residues
MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS
APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY
LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE
RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY
RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG
YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=25.6410256410256, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=25.6410256410256, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4507369, Length=180, Percent_Identity=24.4444444444444, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI1787710, Length=465, Percent_Identity=41.2903225806452, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1790797, Length=464, Percent_Identity=37.0689655172414, Blast_Score=320, Evalue=2e-88,
Organism=Saccharomyces cerevisiae, GI6321000, Length=247, Percent_Identity=25.5060728744939, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356535, Length=356, Percent_Identity=23.5955056179775, Blast_Score=90, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52310; Mature: 52310

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRP
CCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARQDAPALALHASAPVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPF
CCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRYLEGGVAVDPGEIVVTIGATE
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHH
AINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAF
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH
DARGLVLHCASFSKSLSPAYRVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHD
CCCCCEEEHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGGYVLWIELPDGVDAMALYRLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
LAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRP
CCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARQDAPALALHASAPVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPF
CCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRYLEGGVAVDPGEIVVTIGATE
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHH
AINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAF
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH
DARGLVLHCASFSKSLSPAYRVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHD
CCCCCEEEHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGGYVLWIELPDGVDAMALYRLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
LAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]