Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 126447923

GI number: 126447923

Start: 1135209

End: 1136189

Strand: Reverse

Name: rbsC [H]

Synonym: BMA10247_A1163

Alternate gene names: 126447923

Gene position: 1136189-1135209 (Counterclockwise)

Preceding gene: 126446214

Following gene: 126446312

Centisome position: 48.29

GC content: 74.21

Gene sequence:

>981_bases
ATGCGTGACGCAACCGACCGTCTGTCGCGCCTCGCCGCGCTCGGCGCGCTCGCGGCCGTTCTCGCGTTCTTCGCCGTCGC
GGCGCCCGGCTTCGCGACGCTCGCGAACGTCGAGCGCGTGCTCGTCAACAACTTCGCGCTGCTCGCGATCGCCGCGCTCG
GGATGACGCTCGCGCTGTCGATCGGCGCAATCGATCTGTCGCTCGGCACGGCGATCGACGTCGCGAGCCTCGCGTTCGTC
TGCGCGCTCGCGCATCGCGCGGGCTGCGCGAGCGCGGCGCTCGCGGGCCTCGGCGCGGCGCTCGCGCTCGGCGCGGCCAA
TGCGCTGCTCGTCACGCGGCTGGGCATCGCGCCGTTTCTGGCGACGCTCGGCACGCTGTTCATCGGCCAGACAATCCAGC
AACTCGCGACGGACGGCGGGCAGCCGATCTATCTGCTGAGCACCGCACCGCCGCCCGCGTTCGACGCGCTCGCGCACGGC
GTCTGGCTCGGCGTCGCCGCCCCGCTGTGGATCGTCGCCGCGCTCGCCGGCGCGCTGCACGTCGCGCTCGAGTGCTCGAC
GCTCGGCCGGCAAGCACGCGCGCTCGGCGCGCAGCCGGGCGTCGCGCGCCACTCGGGGCTGCGCGTCGGCGCGCTGGCCG
CGGGCGTGTTCGTCGCGAGCGCGCTCGTCTACGGCGTCGCGGGGCTCGTGCTGTCGTCGACGGTCCGGTCTTACGCGCCG
CAAGCGGGCAACGCGTATCTGCTGAACGCGATCGGCGCGACGTTCATCGGCGCGACGCTGTCCGAGGCGCGCCGGCCGAA
CGTCGCCGGCACCCTGCTCGGCGTGCTGCTCGTGAGCTTCGTCGCGAACGGCCTGCTGCTGATCGGCTGGAATTTCTACT
GGCAGCAGGTCGCGAGCGGCGCGCTCGTGTTCGCGGTGCTCGCGCTCGGCTCGGGAGTCGGGCGGGAACGGCGCGCGCGC
GACGCGGGCCAAAGCGGCTGA

Upstream 100 bases:

>100_bases
GTGTCGAGCTATTGGGTGAGCGGCGTCGAGGGCGCGCTGATCCTGTTCGTCGTCGCGGCCGTCGCGCTGCTGCGCCGGCG
CCGCTCGCAGGGAGCATTCG

Downstream 100 bases:

>100_bases
CGCGGGCCCCATGTCCGCTTCCCGCGGCGCGCCGATGTCCGTCCGGCGTTCCGCGAACTCGGCCGAAGCTTGCTGCCCGA
TCCGCCGGCCCCGCCGCCGG

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFV
CALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHG
VWLGVAAPLWIVAALAGALHVALECSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAP
QAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRAR
DAGQSG

Sequences:

>Translated_326_residues
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFV
CALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHG
VWLGVAAPLWIVAALAGALHVALECSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAP
QAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRAR
DAGQSG
>Mature_326_residues
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFV
CALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHG
VWLGVAAPLWIVAALAGALHVALECSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAP
QAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRAR
DAGQSG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=28.6195286195286, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=30.2250803858521, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=25.4901960784314, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082395, Length=311, Percent_Identity=27.3311897106109, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=31.2977099236641, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32580; Mature: 32580

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFL
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALH
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALECSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAP
HHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASG
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHH
ALVFAVLALGSGVGRERRARDAGQSG
HHHHHHHHHCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MRDATDRLSRLAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFL
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALH
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALECSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAP
HHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASG
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHH
ALVFAVLALGSGVGRERRARDAGQSG
HHHHHHHHHCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]