Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is potD [C]
Identifier: 126447569
GI number: 126447569
Start: 2015633
End: 2016703
Strand: Reverse
Name: potD [C]
Synonym: BMA10247_A2082
Alternate gene names: 126447569
Gene position: 2016703-2015633 (Counterclockwise)
Preceding gene: 126445843
Following gene: 126446366
Centisome position: 85.72
GC content: 67.79
Gene sequence:
>1071_bases TTGCTGACGGCGCTGCGCCGCGCCGCGCTCGCCTTCGGCATGTGCGCGACGCTCGTCGCGAACGGCGCATCCGCCGAGCC GCTTTACGCGGGCGAAGACGCGCTTTATGCGAAGGCCGCCGACGAAGGGCTCGTCGTGTCGTTCGACACGGGCCCCGAAT GGGCGAACTGGAAGGCGCTGTTCGCGGCGTTTCGCAAGCGCTATCCGAAGGTGGAGCTCACGTACAACGACATCGGCTCG GCCGCGACGGTCGTCGCGCTCGACAAGTCACGCCGCCGTCCGCAGGCGGACACCGCGTACTACTTCGCGGCATCGGCGCT CGACGCGGCTGGCAAGGACGTCGTCGCGCCGTTCAAGCCGGTCAACTTCGACAAGCTCCCGCCCGTGTTTCGCGAAGCCG ACGGCCGCTGGTTCACCGTGCATTCGCTGAATGTCGCGTTCCTCGTCAACCGCAAGCTCGTGAAGAACGTGCCGCGCCGC TGGTCCGATCTGTTGAAGCCCGAGTACAGGAACGCGGTCGTCTATCTCGACCCGCGTTCGACCGGCCAGGGGCAGGTGGT CGTGTTCGCGGCGGCGTCTGCGCTCGGCGGCGGCGTCGACGATCCGAAGCCCGGCGCGGAATTCTTCGGAAAGCTGAAGC ATGCGGGCAACGTGCTGCGCATCGAGGGCACGACGCCGTATGCGAAGTTCGTCAAGGGTGAGATCCCGATCCTGATCGGC TACGAGAACGACGGCCTGAAGGCGAAGTACGCGGACGGCCTGGGCGATGCGGTCGACGTCGTGATTCCACAGGACGGCAG CGTGTGCGCGCCGTATGCGATGAGCCTCGTGAAGAACGGGCCGAATCCTGCTGCCGCGCAGCTATGGTTGAACTTCGTGA TGAGCGACGCCGGCCAGGCGCTGTTCGCGCACGGCTACGTGCGGCCCGCAGTGCCGGGCGTCGCGCTCGCGCCCGACGTC GCGGCGAAGATGCCGAACGCGCCACAGGTGCGTGCGCTCGACGTCGCGAAGGCCGCCGCGCGCAAGGCCGAAGTCGACCG GCTATGGTCGCAGGCGGCGCTTGGCCAGTAA
Upstream 100 bases:
>100_bases TCGCGATCGAGCCGCGCCATCTGCTCGTGCTGCCCGCTTCGGGCGGCGCGCGATGATTGTTTCGTTTAACGGGAGATCCA CGATGTCTGAAAACCGGCCA
Downstream 100 bases:
>100_bases GGAGCGCGACGTGCAACGATCGTTCCTCGAACGCAGCCTGTTGCGCCGCTTCGGCGCGGCGCCGGCGGGCGGGCTGCTCG CGCTTTTCTTCGTGCTGCCG
Product: putative ABC transporter, periplasmic substrate-binding protein
Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MLTALRRAALAFGMCATLVANGASAEPLYAGEDALYAKAADEGLVVSFDTGPEWANWKALFAAFRKRYPKVELTYNDIGS AATVVALDKSRRRPQADTAYYFAASALDAAGKDVVAPFKPVNFDKLPPVFREADGRWFTVHSLNVAFLVNRKLVKNVPRR WSDLLKPEYRNAVVYLDPRSTGQGQVVVFAAASALGGGVDDPKPGAEFFGKLKHAGNVLRIEGTTPYAKFVKGEIPILIG YENDGLKAKYADGLGDAVDVVIPQDGSVCAPYAMSLVKNGPNPAAAQLWLNFVMSDAGQALFAHGYVRPAVPGVALAPDV AAKMPNAPQVRALDVAKAAARKAEVDRLWSQAALGQ
Sequences:
>Translated_356_residues MLTALRRAALAFGMCATLVANGASAEPLYAGEDALYAKAADEGLVVSFDTGPEWANWKALFAAFRKRYPKVELTYNDIGS AATVVALDKSRRRPQADTAYYFAASALDAAGKDVVAPFKPVNFDKLPPVFREADGRWFTVHSLNVAFLVNRKLVKNVPRR WSDLLKPEYRNAVVYLDPRSTGQGQVVVFAAASALGGGVDDPKPGAEFFGKLKHAGNVLRIEGTTPYAKFVKGEIPILIG YENDGLKAKYADGLGDAVDVVIPQDGSVCAPYAMSLVKNGPNPAAAQLWLNFVMSDAGQALFAHGYVRPAVPGVALAPDV AAKMPNAPQVRALDVAKAAARKAEVDRLWSQAALGQ >Mature_356_residues MLTALRRAALAFGMCATLVANGASAEPLYAGEDALYAKAADEGLVVSFDTGPEWANWKALFAAFRKRYPKVELTYNDIGS AATVVALDKSRRRPQADTAYYFAASALDAAGKDVVAPFKPVNFDKLPPVFREADGRWFTVHSLNVAFLVNRKLVKNVPRR WSDLLKPEYRNAVVYLDPRSTGQGQVVVFAAASALGGGVDDPKPGAEFFGKLKHAGNVLRIEGTTPYAKFVKGEIPILIG YENDGLKAKYADGLGDAVDVVIPQDGSVCAPYAMSLVKNGPNPAAAQLWLNFVMSDAGQALFAHGYVRPAVPGVALAPDV AAKMPNAPQVRALDVAKAAARKAEVDRLWSQAALGQ
Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 38038; Mature: 38038
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTALRRAALAFGMCATLVANGASAEPLYAGEDALYAKAADEGLVVSFDTGPEWANWKAL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHH FAAFRKRYPKVELTYNDIGSAATVVALDKSRRRPQADTAYYFAASALDAAGKDVVAPFKP HHHHHHHCCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHEEHHHHHCCCCCCCCCCCCC VNFDKLPPVFREADGRWFTVHSLNVAFLVNRKLVKNVPRRWSDLLKPEYRNAVVYLDPRS CCCCCCCCHHHCCCCCEEEEEECEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCC TGQGQVVVFAAASALGGGVDDPKPGAEFFGKLKHAGNVLRIEGTTPYAKFVKGEIPILIG CCCCCEEEEEECHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCEEEE YENDGLKAKYADGLGDAVDVVIPQDGSVCAPYAMSLVKNGPNPAAAQLWLNFVMSDAGQA ECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCE LFAHGYVRPAVPGVALAPDVAAKMPNAPQVRALDVAKAAARKAEVDRLWSQAALGQ EHHCCCCCCCCCCCEECCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTALRRAALAFGMCATLVANGASAEPLYAGEDALYAKAADEGLVVSFDTGPEWANWKAL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHH FAAFRKRYPKVELTYNDIGSAATVVALDKSRRRPQADTAYYFAASALDAAGKDVVAPFKP HHHHHHHCCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHEEHHHHHCCCCCCCCCCCCC VNFDKLPPVFREADGRWFTVHSLNVAFLVNRKLVKNVPRRWSDLLKPEYRNAVVYLDPRS CCCCCCCCHHHCCCCCEEEEEECEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCC TGQGQVVVFAAASALGGGVDDPKPGAEFFGKLKHAGNVLRIEGTTPYAKFVKGEIPILIG CCCCCEEEEEECHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCEEEE YENDGLKAKYADGLGDAVDVVIPQDGSVCAPYAMSLVKNGPNPAAAQLWLNFVMSDAGQA ECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCE LFAHGYVRPAVPGVALAPDVAAKMPNAPQVRALDVAKAAARKAEVDRLWSQAALGQ EHHCCCCCCCCCCCEECCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]
Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]