Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is pksF [H]
Identifier: 126447561
GI number: 126447561
Start: 1050334
End: 1051578
Strand: Reverse
Name: pksF [H]
Synonym: BMA10247_A1114
Alternate gene names: 126447561
Gene position: 1051578-1050334 (Counterclockwise)
Preceding gene: 126445712
Following gene: 126446999
Centisome position: 44.7
GC content: 70.84
Gene sequence:
>1245_bases ATGCGAAGCTCTGAGCGCGACGAAATCCTCGTCACCGGCGTCGGCGTCGTATCGGCCATCGGCCAGGGCAGGCAGCCGTT CATCGACGCGCTGCTCGACAGCCGCCACGCATTCGGCGTGATGCGCCGGCCGGGCCGGCAGTTGCCGGACGACGCGGGAG CCGGCCCGGCGCCCGCGTTCTTCGGCGCGGAAATCGACTCGATCGCGTTGCCGCCCATGCTGGACGCGCACCGGCGCACC GCGTCGTATTCCGCCCAGGCGGCCGTCGCATGCGTGCGCGAGGCGTGGGACGACGCCGCGCTCGGCGACGTCGATCCGCT GCGCATCGGCCTCGTGGTCGGCGGCTCGAACGTTCAGCAGCGCGAGCAAGCGCTCGTTCACGACACCTACCGGGGCCGGT ACGCGTTCCTGCGCCCGAGCTACGGCCTGTCGTTCATGGATAGCGATCTCTGCGGCCTGTGCACCGAACTGTTCGGCATT CGCGGCGTCGCGTTCACCGTCGGCGGCGCGTCGGCGAGCGGCCAGCTCGCCGTGCTGCAGGCATGCCGTCTCGTCGAATC GGGCAGCGTCGACGCGTGCATCGCGGTGGGCGCGCTGATGGATCTGTCGTACTGGGAGTGCCAGGCGTTGCGCTCGCTCG GCGCGATGGGCTCGGATCGCTTCGCGGACGAGCCCGACGCCGCATGCCGCCCGTTCGATCAAGACCGGGACGGCTTCATC TACGGCGAATGCAGCGGCGCGATCGTCGTGGAGCGCGCGGCGCGCATGCGCCGCGCGCACGTCTCGCCGTACGCGAAATG GCTCGGCGGCTGCATCCGGATGGACGGCACGCGCGAGCCCGCGCCGTCGCTCGACGGCGAGATGGCCGTGATCGAAGGCG CGCTGCGCGACGCCGGCATCGGCGCGGACAGCATCGATTACGTGAATCCGCACGGCAGCGGCTCGACGCTCGGCGACGCG ACCGAGCTCGACGCGCTCGGCCGCAGCGGCCTCGCGCACGCGCGCATCAACACGACGAAGTCGCTCGTCGGGCACGGCCT GAGCGCGGCGGGCATCGTCGAGCTGATCGCGACGCTGCTGCAAATGAGGGCGCGGCGCCTGCATCCGAGCCGCAATCTCG ACCGGCCGATCGACGAGCGGTTCGACTGGGTGCGTTCGACCTGCGGGTCGGACATCCGGCGCGCCCTGAAATTGAGCATC GGATTCGGCGGCATCAACACCGCGCTCTGTCTCGAGCGCTGTTGA
Upstream 100 bases:
>100_bases TCGGAAATCGTCATCATGACGCTCGAATCGCTTTCGCTGCGCATTCCGCTCGTCGAGTTCGCCGGCGCGCGCAACATCGG CGAGCTGGCGGAAGTGCTGT
Downstream 100 bases:
>100_bases CGCTCGGCCGGAAACACGCTGTAGGCATGGGAAGCAGGAACATGGGCGACTATCTGGCGCAGGACGTGCGTATCGAGCGG ATCACGGTTCGCGATCCCGA
Product: polyketide beta-ketoacyl:acyl carrier protein synthase
Products: NA
Alternate protein names: Malonyl acyl-carrier-protein decarboxylase [H]
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MRSSERDEILVTGVGVVSAIGQGRQPFIDALLDSRHAFGVMRRPGRQLPDDAGAGPAPAFFGAEIDSIALPPMLDAHRRT ASYSAQAAVACVREAWDDAALGDVDPLRIGLVVGGSNVQQREQALVHDTYRGRYAFLRPSYGLSFMDSDLCGLCTELFGI RGVAFTVGGASASGQLAVLQACRLVESGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPDAACRPFDQDRDGFI YGECSGAIVVERAARMRRAHVSPYAKWLGGCIRMDGTREPAPSLDGEMAVIEGALRDAGIGADSIDYVNPHGSGSTLGDA TELDALGRSGLAHARINTTKSLVGHGLSAAGIVELIATLLQMRARRLHPSRNLDRPIDERFDWVRSTCGSDIRRALKLSI GFGGINTALCLERC
Sequences:
>Translated_414_residues MRSSERDEILVTGVGVVSAIGQGRQPFIDALLDSRHAFGVMRRPGRQLPDDAGAGPAPAFFGAEIDSIALPPMLDAHRRT ASYSAQAAVACVREAWDDAALGDVDPLRIGLVVGGSNVQQREQALVHDTYRGRYAFLRPSYGLSFMDSDLCGLCTELFGI RGVAFTVGGASASGQLAVLQACRLVESGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPDAACRPFDQDRDGFI YGECSGAIVVERAARMRRAHVSPYAKWLGGCIRMDGTREPAPSLDGEMAVIEGALRDAGIGADSIDYVNPHGSGSTLGDA TELDALGRSGLAHARINTTKSLVGHGLSAAGIVELIATLLQMRARRLHPSRNLDRPIDERFDWVRSTCGSDIRRALKLSI GFGGINTALCLERC >Mature_414_residues MRSSERDEILVTGVGVVSAIGQGRQPFIDALLDSRHAFGVMRRPGRQLPDDAGAGPAPAFFGAEIDSIALPPMLDAHRRT ASYSAQAAVACVREAWDDAALGDVDPLRIGLVVGGSNVQQREQALVHDTYRGRYAFLRPSYGLSFMDSDLCGLCTELFGI RGVAFTVGGASASGQLAVLQACRLVESGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPDAACRPFDQDRDGFI YGECSGAIVVERAARMRRAHVSPYAKWLGGCIRMDGTREPAPSLDGEMAVIEGALRDAGIGADSIDYVNPHGSGSTLGDA TELDALGRSGLAHARINTTKSLVGHGLSAAGIVELIATLLQMRARRLHPSRNLDRPIDERFDWVRSTCGSDIRRALKLSI GFGGINTALCLERC
Specific function: Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. It decarboxylates selectively the malonyl group attached on the acyl-carrier-protein AcpK (Mal-AcpK) [H]
COG id: COG0304
COG function: function code IQ; 3-oxoacyl-(acyl-carrier-protein) synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the beta-ketoacyl-ACP synthases family [H]
Homologues:
Organism=Homo sapiens, GI8923559, Length=432, Percent_Identity=27.3148148148148, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI41872631, Length=269, Percent_Identity=26.7657992565056, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI223972627, Length=140, Percent_Identity=35, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI1788663, Length=423, Percent_Identity=28.6052009456265, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1787337, Length=310, Percent_Identity=31.6129032258064, Blast_Score=119, Evalue=4e-28, Organism=Caenorhabditis elegans, GI212642053, Length=269, Percent_Identity=27.5092936802974, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71983541, Length=434, Percent_Identity=25.5760368663594, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17550940, Length=276, Percent_Identity=26.8115942028986, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983535, Length=227, Percent_Identity=31.7180616740088, Blast_Score=78, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6320904, Length=445, Percent_Identity=25.6179775280899, Blast_Score=114, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644341, Length=432, Percent_Identity=29.1666666666667, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI221330659, Length=343, Percent_Identity=23.0320699708455, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI19920632, Length=343, Percent_Identity=23.0320699708455, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581345, Length=278, Percent_Identity=25.1798561151079, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: 24024 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 30,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014031 - InterPro: IPR014030 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF00109 ketoacyl-synt; PF02801 Ketoacyl-synt_C [H]
EC number: =4.1.1.87 [H]
Molecular weight: Translated: 44084; Mature: 44084
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSSERDEILVTGVGVVSAIGQGRQPFIDALLDSRHAFGVMRRPGRQLPDDAGAGPAPAF CCCCCCCCEEEECHHHHHHHCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCH FGAEIDSIALPPMLDAHRRTASYSAQAAVACVREAWDDAALGDVDPLRIGLVVGGSNVQQ HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH REQALVHDTYRGRYAFLRPSYGLSFMDSDLCGLCTELFGIRGVAFTVGGASASGQLAVLQ HHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH ACRLVESGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPDAACRPFDQDRDGFI HHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEE YGECSGAIVVERAARMRRAHVSPYAKWLGGCIRMDGTREPAPSLDGEMAVIEGALRDAGI EECCCCHHHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC GADSIDYVNPHGSGSTLGDATELDALGRSGLAHARINTTKSLVGHGLSAAGIVELIATLL CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH QMRARRLHPSRNLDRPIDERFDWVRSTCGSDIRRALKLSIGFGGINTALCLERC HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC >Mature Secondary Structure MRSSERDEILVTGVGVVSAIGQGRQPFIDALLDSRHAFGVMRRPGRQLPDDAGAGPAPAF CCCCCCCCEEEECHHHHHHHCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCH FGAEIDSIALPPMLDAHRRTASYSAQAAVACVREAWDDAALGDVDPLRIGLVVGGSNVQQ HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH REQALVHDTYRGRYAFLRPSYGLSFMDSDLCGLCTELFGIRGVAFTVGGASASGQLAVLQ HHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH ACRLVESGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPDAACRPFDQDRDGFI HHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEE YGECSGAIVVERAARMRRAHVSPYAKWLGGCIRMDGTREPAPSLDGEMAVIEGALRDAGI EECCCCHHHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC GADSIDYVNPHGSGSTLGDATELDALGRSGLAHARINTTKSLVGHGLSAAGIVELIATLL CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH QMRARRLHPSRNLDRPIDERFDWVRSTCGSDIRRALKLSIGFGGINTALCLERC HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7704258; 9384377 [H]