Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 126447556

GI number: 126447556

Start: 2107211

End: 2109688

Strand: Reverse

Name: yjcF [C]

Synonym: BMA10247_A2173

Alternate gene names: 126447556

Gene position: 2109688-2107211 (Counterclockwise)

Preceding gene: 126445657

Following gene: 126445896

Centisome position: 89.67

GC content: 69.77

Gene sequence:

>2478_bases
ATGAAAATCGTCAAACCGCTTGCCATCAGCCCGCTGACCCGCGTGTACCGGATGCACGGCCGGGAGTATCTCGGCGTCGC
CGCGCTGTTGATCGCGACGCTCGGCGACGAGCCGAAACTGCTGGCCGAATCGGCGCTCTGGCGTCTGGCCGGCGACGAAC
TGCGCGGCTATCCGCTCGACATGGCGCTGCCGAAGGCGTGTCCGGAGTTTCTCGTGTCCGGATACGCGTACGGAAAGTAC
GCGAGCGATCCGCACGCGTGCGCGTGCGAAGTGGGCGTGCGCATTGCCGGCCTCGAGAAGCGGCTGCGTGTCTGCGGCGA
CCGGCAGTGGGCGGGCGCGCGCATCACCGCGCCGCGGCCGTTCGAGCGGCTACCGATCGACTGGGATCTCGCTTACGGCG
GCGCGGGTTGCGCGGACAATCCGCGAGGCCGCGGCGCGCACGCGCGGGAGGGCGCGCCGCGCGATCTGCCGAATGTCGAA
TACGCGCACAGCCCGATGCGCTTTGCGCACGAGCAACCCGCGCCCGCCGGCTTTTGCCCGGTCGACGCGGCATGGCCGGC
GCGCGCCGGCCTGTACGGCGCGCTCGATCGGCAATGGCAGGAAGAGGATTGTCCGGGCTTTCCGCGCACGCTCGATCCGC
GCTACTTCAACATCGCGCCGGCCGATCAGCAACTGCCCGAGCTGCGGGCATTCCCGGACGGCGCGCGCTACGAACTGACG
CACATGCATCCGGACCACGCGACGCTCGCGGGAAACCTGCCCGCGCTGCGCGCGAGATCGTTCGTGGTACGTCGGGGCAG
CGATGCGCCCGAGGAAATGCCGATGCGCTTGACGACCGCGTGGTTCGTTCCGCATCGCGAACGCGTGATCCTGATCTATC
ACGGCGTCACGCCCGTTCGCGCGTTCGACGCGAGCGACGTGCAGACGGTGCTGTTCGGTGCGGAGGCGAGCGGGCACGCG
AGGCCCGCCGACTGGTATCGGCAGGTGATCGAGTGGCGCACGCGGGACGACAGGGCGGCGCTGTACGCGCTGCGCGACCG
GGATCTGCTGCCCGAGCATGCGCTTGCGCCCGAAGCGGCGGCGACGCCCGAGCCGACGCAGCAGAGCGCGAAGCAGCGGC
AGCTTCGCGAGCGGTTGAGCGTCTTTCCGGATGCTCCGCGCGCACAGACGCCGGCGCCGGATCGGCTGGCCGAATTCGTC
GAGCAGCAGCAAGCGCTCGCCGACGAAAAGCGCGCCGCGCTGGAAGCCATGCGGCGGGAACTGGCGACCAGCGAAGTATT
TTCGGTCGGCCGTCGGCGCGGCCCGCCCGGCCGGATCGCGCCCGCGGACGAAGATCCCGCGCGGCACGCGGGCGCGTTGG
CCGAATCGCCGGACATCCGGGCGCTCGAACGCGACGCGGACGAGCGCCTTCGCGGGCTGTACCAGCAGTGCGCGCAACAT
CAGGACGCGCCGGCCCGGCTGCACGGCGCGGCCGCGCGAGCGCGCCGCGAGTGCGTCGCGTCGGCCGCCGCGGCCGGCCA
GTCGCTGCAAGGCGCCGATCTGACCGGCGCGGACCTCTCGGGAATGGACTTGCGCGGCGCGCGCCTGGCCGGCGCGATGC
TGGAGAACGCCGATTTGAGCGGCGCCGATCTGACGGGCGCGGATCTGTCGCGCACGGTGCTCGTGCGCGCCGATCTGACA
CGTGCGAAGCTCGTCGATGCGCGCCTGACGGCGGCCAATCTGTCGCTCGCGCATTGCGAGCGGACGGATTTCTCCGGCTC
GGATTTGAGTGACGGCATTTTCGAGCAGGTACACCTACGAGATTGCCGCTTCAACGGCAGCGTGCTGGCGAGCACGCGCT
TCGACGCGTGCCGGTTCGATGCCGTCGATTTCGGTCGCGCGACGCTGCGCGAGCTGATCTTCATCGAACAATCGTTCAGC
GGCGTGAGCTTCTCGGATGCGACGATCCGCAAGATGCTGCTGATGCGTTGCGCGTTCGCCGACGTGCGGTTCTCGGCGGC
GAGCATCGACGGATTCGGGATCGTCGAGACGCAGGCGAGCGGGCAGCTCCGCTTCGATCGCGCGAGCGTGAACAAAGCGT
GTTTCGTCGGGCGCTGCGACATCGGGCGCGCCGATTTCTCGTTCGCGACGCTGACGGAGGTCAATTTCCGCGAGACGCAG
CTCGTCGAGGCGAACTTCGGCGGCGCGCGCATCGGCAATTGCGATTTCACCGATGCGTGCCTGCGAGCAGCCGATCTACG
GGGCGCGAAGGCCGAGGGCAGCCCGTTCGTGCGCGCCGATCTCACGCGCGCCGATCTTCGGGACACCGATCTGATCGCCG
CGTATCTGCGCGGCGCGAAGCTGGACGGCGCGGACCTTCGGCGCGCCAACCTGTTTCGCGCGAACCTCTCGCAGATCCTC
ACCGATGCCGATACGCGCTGGCAGGGCGCGTACCTGAACCGGGCGGTGCGGTTTCCGCTGGCGGAGGCGCGCACATGA

Upstream 100 bases:

>100_bases
ACGCTCGTGCAGGTCGCCAAGAAGACGCAGGAATGCGAATTCATCAAGGGCATCAAGATCTCGATGTGAACGCACGCTCG
CGCGAACGCCACTACACCCC

Downstream 100 bases:

>100_bases
GCACGCGCGCGGATCGATTGCGCGACGCGATCCGGCATGGCCGCGCGATTCGCGACACCGCGATCGACGCGGGCGACTTC
GACGGGCACGACTGGTCGGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 825; Mature: 825

Protein sequence:

>825_residues
MKIVKPLAISPLTRVYRMHGREYLGVAALLIATLGDEPKLLAESALWRLAGDELRGYPLDMALPKACPEFLVSGYAYGKY
ASDPHACACEVGVRIAGLEKRLRVCGDRQWAGARITAPRPFERLPIDWDLAYGGAGCADNPRGRGAHAREGAPRDLPNVE
YAHSPMRFAHEQPAPAGFCPVDAAWPARAGLYGALDRQWQEEDCPGFPRTLDPRYFNIAPADQQLPELRAFPDGARYELT
HMHPDHATLAGNLPALRARSFVVRRGSDAPEEMPMRLTTAWFVPHRERVILIYHGVTPVRAFDASDVQTVLFGAEASGHA
RPADWYRQVIEWRTRDDRAALYALRDRDLLPEHALAPEAAATPEPTQQSAKQRQLRERLSVFPDAPRAQTPAPDRLAEFV
EQQQALADEKRAALEAMRRELATSEVFSVGRRRGPPGRIAPADEDPARHAGALAESPDIRALERDADERLRGLYQQCAQH
QDAPARLHGAAARARRECVASAAAAGQSLQGADLTGADLSGMDLRGARLAGAMLENADLSGADLTGADLSRTVLVRADLT
RAKLVDARLTAANLSLAHCERTDFSGSDLSDGIFEQVHLRDCRFNGSVLASTRFDACRFDAVDFGRATLRELIFIEQSFS
GVSFSDATIRKMLLMRCAFADVRFSAASIDGFGIVETQASGQLRFDRASVNKACFVGRCDIGRADFSFATLTEVNFRETQ
LVEANFGGARIGNCDFTDACLRAADLRGAKAEGSPFVRADLTRADLRDTDLIAAYLRGAKLDGADLRRANLFRANLSQIL
TDADTRWQGAYLNRAVRFPLAEART

Sequences:

>Translated_825_residues
MKIVKPLAISPLTRVYRMHGREYLGVAALLIATLGDEPKLLAESALWRLAGDELRGYPLDMALPKACPEFLVSGYAYGKY
ASDPHACACEVGVRIAGLEKRLRVCGDRQWAGARITAPRPFERLPIDWDLAYGGAGCADNPRGRGAHAREGAPRDLPNVE
YAHSPMRFAHEQPAPAGFCPVDAAWPARAGLYGALDRQWQEEDCPGFPRTLDPRYFNIAPADQQLPELRAFPDGARYELT
HMHPDHATLAGNLPALRARSFVVRRGSDAPEEMPMRLTTAWFVPHRERVILIYHGVTPVRAFDASDVQTVLFGAEASGHA
RPADWYRQVIEWRTRDDRAALYALRDRDLLPEHALAPEAAATPEPTQQSAKQRQLRERLSVFPDAPRAQTPAPDRLAEFV
EQQQALADEKRAALEAMRRELATSEVFSVGRRRGPPGRIAPADEDPARHAGALAESPDIRALERDADERLRGLYQQCAQH
QDAPARLHGAAARARRECVASAAAAGQSLQGADLTGADLSGMDLRGARLAGAMLENADLSGADLTGADLSRTVLVRADLT
RAKLVDARLTAANLSLAHCERTDFSGSDLSDGIFEQVHLRDCRFNGSVLASTRFDACRFDAVDFGRATLRELIFIEQSFS
GVSFSDATIRKMLLMRCAFADVRFSAASIDGFGIVETQASGQLRFDRASVNKACFVGRCDIGRADFSFATLTEVNFRETQ
LVEANFGGARIGNCDFTDACLRAADLRGAKAEGSPFVRADLTRADLRDTDLIAAYLRGAKLDGADLRRANLFRANLSQIL
TDADTRWQGAYLNRAVRFPLAEART
>Mature_825_residues
MKIVKPLAISPLTRVYRMHGREYLGVAALLIATLGDEPKLLAESALWRLAGDELRGYPLDMALPKACPEFLVSGYAYGKY
ASDPHACACEVGVRIAGLEKRLRVCGDRQWAGARITAPRPFERLPIDWDLAYGGAGCADNPRGRGAHAREGAPRDLPNVE
YAHSPMRFAHEQPAPAGFCPVDAAWPARAGLYGALDRQWQEEDCPGFPRTLDPRYFNIAPADQQLPELRAFPDGARYELT
HMHPDHATLAGNLPALRARSFVVRRGSDAPEEMPMRLTTAWFVPHRERVILIYHGVTPVRAFDASDVQTVLFGAEASGHA
RPADWYRQVIEWRTRDDRAALYALRDRDLLPEHALAPEAAATPEPTQQSAKQRQLRERLSVFPDAPRAQTPAPDRLAEFV
EQQQALADEKRAALEAMRRELATSEVFSVGRRRGPPGRIAPADEDPARHAGALAESPDIRALERDADERLRGLYQQCAQH
QDAPARLHGAAARARRECVASAAAAGQSLQGADLTGADLSGMDLRGARLAGAMLENADLSGADLTGADLSRTVLVRADLT
RAKLVDARLTAANLSLAHCERTDFSGSDLSDGIFEQVHLRDCRFNGSVLASTRFDACRFDAVDFGRATLRELIFIEQSFS
GVSFSDATIRKMLLMRCAFADVRFSAASIDGFGIVETQASGQLRFDRASVNKACFVGRCDIGRADFSFATLTEVNFRETQ
LVEANFGGARIGNCDFTDACLRAADLRGAKAEGSPFVRADLTRADLRDTDLIAAYLRGAKLDGADLRRANLFRANLSQIL
TDADTRWQGAYLNRAVRFPLAEART

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 90481; Mature: 90481

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVKPLAISPLTRVYRMHGREYLGVAALLIATLGDEPKLLAESALWRLAGDELRGYPLD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCCC
MALPKACPEFLVSGYAYGKYASDPHACACEVGVRIAGLEKRLRVCGDRQWAGARITAPRP
HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHCCCEEECHHHHHHHHCCCCCCCCEECCCCC
FERLPIDWDLAYGGAGCADNPRGRGAHAREGAPRDLPNVEYAHSPMRFAHEQPAPAGFCP
HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
VDAAWPARAGLYGALDRQWQEEDCPGFPRTLDPRYFNIAPADQQLPELRAFPDGARYELT
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHCHHHHCCCCCCCEEEE
HMHPDHATLAGNLPALRARSFVVRRGSDAPEEMPMRLTTAWFVPHRERVILIYHGVTPVR
EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCEEEEEEECCCCCEEEEEEECCCCEE
AFDASDVQTVLFGAEASGHARPADWYRQVIEWRTRDDRAALYALRDRDLLPEHALAPEAA
ECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCCCC
ATPEPTQQSAKQRQLRERLSVFPDAPRAQTPAPDRLAEFVEQQQALADEKRAALEAMRRE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATSEVFSVGRRRGPPGRIAPADEDPARHAGALAESPDIRALERDADERLRGLYQQCAQH
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
QDAPARLHGAAARARRECVASAAAAGQSLQGADLTGADLSGMDLRGARLAGAMLENADLS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
GADLTGADLSRTVLVRADLTRAKLVDARLTAANLSLAHCERTDFSGSDLSDGIFEQVHLR
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHH
DCRFNGSVLASTRFDACRFDAVDFGRATLRELIFIEQSFSGVSFSDATIRKMLLMRCAFA
HCCCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
DVRFSAASIDGFGIVETQASGQLRFDRASVNKACFVGRCDIGRADFSFATLTEVNFRETQ
HHEEEEECCCCCEEEEECCCCCEEEEHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCEE
LVEANFGGARIGNCDFTDACLRAADLRGAKAEGSPFVRADLTRADLRDTDLIAAYLRGAK
EEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHCCCC
LDGADLRRANLFRANLSQILTDADTRWQGAYLNRAVRFPLAEART
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MKIVKPLAISPLTRVYRMHGREYLGVAALLIATLGDEPKLLAESALWRLAGDELRGYPLD
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCCC
MALPKACPEFLVSGYAYGKYASDPHACACEVGVRIAGLEKRLRVCGDRQWAGARITAPRP
HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHCCCEEECHHHHHHHHCCCCCCCCEECCCCC
FERLPIDWDLAYGGAGCADNPRGRGAHAREGAPRDLPNVEYAHSPMRFAHEQPAPAGFCP
HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
VDAAWPARAGLYGALDRQWQEEDCPGFPRTLDPRYFNIAPADQQLPELRAFPDGARYELT
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHCHHHHCCCCCCCEEEE
HMHPDHATLAGNLPALRARSFVVRRGSDAPEEMPMRLTTAWFVPHRERVILIYHGVTPVR
EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCEEEEEEECCCCCEEEEEEECCCCEE
AFDASDVQTVLFGAEASGHARPADWYRQVIEWRTRDDRAALYALRDRDLLPEHALAPEAA
ECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCCCC
ATPEPTQQSAKQRQLRERLSVFPDAPRAQTPAPDRLAEFVEQQQALADEKRAALEAMRRE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATSEVFSVGRRRGPPGRIAPADEDPARHAGALAESPDIRALERDADERLRGLYQQCAQH
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
QDAPARLHGAAARARRECVASAAAAGQSLQGADLTGADLSGMDLRGARLAGAMLENADLS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
GADLTGADLSRTVLVRADLTRAKLVDARLTAANLSLAHCERTDFSGSDLSDGIFEQVHLR
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHH
DCRFNGSVLASTRFDACRFDAVDFGRATLRELIFIEQSFSGVSFSDATIRKMLLMRCAFA
HCCCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
DVRFSAASIDGFGIVETQASGQLRFDRASVNKACFVGRCDIGRADFSFATLTEVNFRETQ
HHEEEEECCCCCEEEEECCCCCEEEEHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCEE
LVEANFGGARIGNCDFTDACLRAADLRGAKAEGSPFVRADLTRADLRDTDLIAAYLRGAK
EEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHCCCC
LDGADLRRANLFRANLSQILTDADTRWQGAYLNRAVRFPLAEART
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA