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The map label for this gene is ybhD [H]

Identifier: 126446993

GI number: 126446993

Start: 975765

End: 976676

Strand: Reverse

Name: ybhD [H]

Synonym: BMA10247_A1037

Alternate gene names: 126446993

Gene position: 976676-975765 (Counterclockwise)

Preceding gene: 126447626

Following gene: 126445612

Centisome position: 41.51

GC content: 67.0

Gene sequence:

>912_bases
ATGCGATTCGACCTGACCGATCTGCGACTTTTCCTGCACGTCTGCGAAGCCGGCAGCATCACGGGCGGCGCCGAGCGCGC
GCACATGACGCTGCAATCCGCGAGCGAGCGGATTCGCGGCATGGAGGAAGAGCTCGGCGTGCCGCTTTTACAGCGCGCGA
AGCGCGGCACGCGCGCGACCGAAGCCGGCCGCGCGCTCGAGCATCACGCGCGCGTCGTGCTGCAGCAGATCGACCATATG
CGCGGCGAGCTGCAGCAATTCGGCGCGGGGCTGCGCGGCCACATTCGCCTGCTCAGCAACACCGCCGCGCTCAGCGAATA
CCTGCCCGACGCGCTCGCCGAATACCTGCCGCGCCACCCGAAGCTGTCGGTGAGCGTCGAGGAGCGCTCGAGCCAGGAGA
TCGTCCATGCGATTCGCGGCAAGACCGCCGATTTCGGGATCGTCGCGGATTCGGTCGGCCTCGACGGACTCGAGCAGATG
CCGTTTCGCGAGGATTGGCTGATCGCCGTCGCGGCGGTCGATCATTCGCTCGCCGCGCGCGAGCGGGTGGCGTTCGCGGA
GCTCGTCGATGCCGACTTCATCGGCATGACGGACGGCAGCGCGCTGCAGGTCCATCTCGCCGACCAGGCGAAGGCGCTCG
GCAAGCGGATCGACTACCGCGTTCAACTGAAGAGCTTCGACGCGATCTGCCGATTGATCGAGCGCGGCGTCGGGATCGGC
ATCGTGTCGCGCCATGCGGCGCTGCGCGCGCAGCAGACGATGCAGATCCGGCTGATCGAGCTCACGGATCCGTGGGCGCA
CCGTCGGCTGACGATCTGTGCGCGCAGCTTCGACGAGCTTCCGAAATACACGCGCGAATTCATCGCGTTTCTCGCGCACG
ATCCGGGCAAGGACGAATCGTTTGCAGCCTGA

Upstream 100 bases:

>100_bases
ATGCGGAACCCGCGAAGCGGACCTCAGGCACGGCCTGACCGCGACGGCCCGCAATCCTGTTACCGTATCGCCCATTACAA
CGACGACGCAAGCCAGCCCC

Downstream 100 bases:

>100_bases
TTGCCGTCATTTGGCGGCCGGCGCGCGCCGAACGTCGTTTTATCCGCGCGCGGCCGACAAAAAATGGCGCGAACTGCGGC
GCGTTCTCACGCGTGCAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM
RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM
PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG
IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA

Sequences:

>Translated_303_residues
MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM
RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM
PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG
IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA
>Mature_303_residues
MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM
RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM
PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG
IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=24.9146757679181, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=27.0161290322581, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787530, Length=289, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786713, Length=260, Percent_Identity=28.4615384615385, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=23.4567901234568, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=24.6153846153846, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=22.2996515679443, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=265, Percent_Identity=22.6415094339623, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=193, Percent_Identity=26.4248704663212, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786401, Length=245, Percent_Identity=22.4489795918367, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33689; Mature: 33689

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRAT
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCHH
EAGRALEHHARVVLQQIDHMRGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQMPFREDWLIAVAAVDHSLAAR
CEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHEEEEEHHHHHHHHH
ERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG
HHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCC
IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDES
HHHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FAA
CCC
>Mature Secondary Structure
MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRAT
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCHH
EAGRALEHHARVVLQQIDHMRGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQMPFREDWLIAVAAVDHSLAAR
CEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHEEEEEHHHHHHHHH
ERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG
HHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCC
IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDES
HHHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]