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The map label for this gene is hrpL [H]

Identifier: 126446895

GI number: 126446895

Start: 1277866

End: 1278336

Strand: Direct

Name: hrpL [H]

Synonym: BMA10247_A1306

Alternate gene names: 126446895

Gene position: 1277866-1278336 (Clockwise)

Preceding gene: 126445849

Following gene: 126447473

Centisome position: 54.32

GC content: 65.82

Gene sequence:

>471_bases
TTGCTACCCCGTCTGCTCGCCTTCGCTCGCCGCCTCTGCGGCGATACGCACGACGCCGACGATCTGGTGCAGCGTGCGTG
CCTGAGGGCGCTCGAGCGCCCTCATCAATTGCAGCGGGATACGTCGCCGCTCAATTGGATGATGGCGATCGTGCATTCGA
GCTGGATGAGCGAATTGCGCGCGAGGCATGTGCGGCATCGATTGCAAACCGACTGGAACGACGACGTCATCGACGCGCTG
CCCGGGCCGACGGCCGCCGATCCGCAAATCCACGCGATGAATGCGCAGATCATTCGCGCCGTCGAATTGCTGCCTGAAAC
ACTGCGCGCGGCGATGCTGCTGATTGCCGTCGAAGGGCTGAGCTACCAGGAAGCGGCCGGCGTGCTCGACGTGCCGATCG
GAACCGTGATGAGCCGCCTGTGGCGCGCGCGCCAATCCATCGGCGCGCAGTTCGGCGCGCGCGAGCGCTAG

Upstream 100 bases:

>100_bases
GCAATGGACTTGCCTAGGGGGCGACCTGTGTGTCGTATCTTCGTTCATGGAGGAAGCCGCATTTATGACCGGTGCAGATA
TCGCTTCTACACTTCCGCCG

Downstream 100 bases:

>100_bases
CCGCCCGTGCGCGAGCGCGGCCGAGCACGCGCGAGAGGGCACGAATCTCGCGCAAGACGATGCGCCGATCGGAACGAACG
TGGAGGTCGGTCGGCCGCGT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRLQTDWNDDVIDAL
PGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER

Sequences:

>Translated_156_residues
MLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRLQTDWNDDVIDAL
PGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER
>Mature_156_residues
MLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRLQTDWNDDVIDAL
PGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in the activation of hprD as well as other hrp loci which are involved in plant pathogenic

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=142, Percent_Identity=29.5774647887324, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17591; Mature: 17591

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELR
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHVRHRLQTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGL
HHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER
CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELR
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHVRHRLQTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGL
HHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER
CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8106313 [H]