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The map label for this gene is glxA [H]

Identifier: 126446802

GI number: 126446802

Start: 1882393

End: 1883337

Strand: Direct

Name: glxA [H]

Synonym: BMA10247_A1960

Alternate gene names: 126446802

Gene position: 1882393-1883337 (Clockwise)

Preceding gene: 126446233

Following gene: 126446265

Centisome position: 80.01

GC content: 66.98

Gene sequence:

>945_bases
ATGCCAGAAGAATTTCATTTCCTGCTGATGCCCGGCTTCTCCGCGCTCGGCTTCATGTCGGCTGTCGAGCCGCTGCGCGT
CGCGAACCGCTTCAGGCCGAACCTGTACCACTGGCGCATCGTGAGCTGCGACGGCGCGCCCGTCGTCGCGAGCAACGGCA
TCTCACTGAACGCGGACGCCGCATTCGCGCAGGTCGAGCATGCGCACACGATCTTCGTGATCGCCGGCTTCGATCCGCTC
GCGCGCTACACGCGCGCGCTCGGCGACTGGCTCAGGCGCGAGTATCGGCAAGGCGCGACGGCGGGCGGCATCGATACCGG
CAGCTTCGTGCTCGCGGAAGCGGGGCTCTTCGACGCGTCGCATGCGCTGACGCTGCACTGGGAAGCGCTCGCCGCGTTCC
AGGAGCGCTACCCGCACCTGAAGACCACGCAGGAACTGTTCGAGATCGACGCGCGACGCATCACGTGCGCGGGCGGCACC
GCGTCGATCGACATGATGCTCGACCTGATCGGCCGCCGGCACGGCGCCGAGCTCGCCGCGACGATCTCCGAGCAGTTCGT
GCTGAGCCGGATCCGCCAACGCTCCGATCGCCAGCGCCTCGAGATCGCCGCGCGCTACGGCGTGCACAACCGCAAGCTGA
TCCAGGTGATCGGAACCATGGAGCACCACATCGAAAGCCCGCTGTCGTCCGACGCGCTCGCGCGGGAGGTGGGCATCACG
CGCCGCCAGCTCGAGCGGCTGTTCAGCACGATGCTCGACGATACGCCGGCACGTTTCCATTTGCGGCTGCGGCTCAAGCG
TGCGCGCGAACTGCTTCAGCAGACCGACATGACGGTCGCGGCCGTATGCGCGGCGTGCGGATTCGAATCGCCTTCGCATT
TTTCCCGCACCTATCGCGCGCAATTCGGCACAAGCCCGAGAAGCGACCGGCATACGTCGCGTTGA

Upstream 100 bases:

>100_bases
GTCTTGGCGCGGCTTCGGCCGCGAGCGCCGCCTCGTGCTGCTTGCCTGCTTGCGCCTTGCTTGCTACGCTCGGCCGATCG
TTTCGCGAGCGTGCGCGCCC

Downstream 100 bases:

>100_bases
GCCGCCCGCGAGATGCGCGGCCGGGGAATGCGGCAGTGCAAAATCGTGCGCTGCCTGACGGTTTCCGTCGATGGAACCGC
TCCTCGAAAATAATTCGAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MPEEFHFLLMPGFSALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPL
ARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGT
ASIDMMLDLIGRRHGAELAATISEQFVLSRIRQRSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGIT
RRQLERLFSTMLDDTPARFHLRLRLKRARELLQQTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR

Sequences:

>Translated_314_residues
MPEEFHFLLMPGFSALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPL
ARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGT
ASIDMMLDLIGRRHGAELAATISEQFVLSRIRQRSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGIT
RRQLERLFSTMLDDTPARFHLRLRLKRARELLQQTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR
>Mature_313_residues
PEEFHFLLMPGFSALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPLA
RYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTA
SIDMMLDLIGRRHGAELAATISEQFVLSRIRQRSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITR
RQLERLFSTMLDDTPARFHLRLRLKRARELLQQTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=119, Percent_Identity=31.9327731092437, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35277; Mature: 35145

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEEFHFLLMPGFSALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADA
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCEEECCCH
AFAQVEHAHTIFVIAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDAS
HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCCCCCC
HALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAA
CEEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCHHHHH
TISEQFVLSRIRQRSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGIT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCHH
RRQLERLFSTMLDDTPARFHLRLRLKRARELLQQTDMTVAAVCAACGFESPSHFSRTYRA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHH
QFGTSPRSDRHTSR
HCCCCCCCCCCCCC
>Mature Secondary Structure 
PEEFHFLLMPGFSALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADA
CCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCEEECCCH
AFAQVEHAHTIFVIAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDAS
HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCCCCCC
HALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAA
CEEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCHHHHH
TISEQFVLSRIRQRSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGIT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCHH
RRQLERLFSTMLDDTPARFHLRLRLKRARELLQQTDMTVAAVCAACGFESPSHFSRTYRA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHH
QFGTSPRSDRHTSR
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]